Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01003 ATGGATTGGTGGGTTTTCAACCACTCGACACCTTTGTGGATTTGTGATGTTGAAGAGGAGAAAGGAGAAATAGAGGGGGAAGAAGAAGAAGAAGAAGAAGAAGTCTCTACAAAAGGAGTTCTAAAGAGGGAAATTGATGGGCCTATCAGATTTCCAAGCCTTCCACGCGTTGCTTCCCCTGACTTGGCTTCCTACTTTGTGTCTTATCAAGTTTCTTACGGATGGAAAATGGTAGAGAATTTGATGGAGGAAATGTCCCCCGCGGTTGTGGTGCCATTTAGGTTAGGTAATTCAGTCTGTGATAACCCCAACATGGCAACTCCCATGGATATCACAAGACTTAAGCTAATGGCAGATACTGCTGGTTTGTTATCTGATTCTGTGACTAAGGCTTCTGATGACCTGATTGAAGTAGGTTCTGATGATTGTAAGAGTTCTAATGGGGAGGAAGAGGTTGGTATCACTAAAGTTTCGGGTATGAATGACAAGTGTGAAGGAGTTCCATTGTCAGTTGTGTTATCTCAAAATAATAGCAGTTGGGTTCCGGCAGATGAGTCAATATCCCATGGAAGTGAGGAAGATGATTCTTTATCTCTAGAGGGCGATCACATTTATGATAGCTCTTGTTCACATTCAGTGATTAGTGAGAATAGCAGCATTTGTGGTGATGATTTTTTAGGTTCTGAGGTGTCTTCTTTTGAAGCATTTGATTCCATCAGCAATCCAAAGGACATTAGCAGCGTTGAGATTGCAGCTAAAGCCAATATTGAAGAGACTAATGTTGAAAGTCTTGACTCTCAGATTGCGAGTTCTTCTTCTGCAGCAGCTAGCCTTGAAGAAGATGTTGGAGATGGGCTAGGCACTGAAGCATGTAATAACACGGTTCTTCAGCTGCCTCTTGAGAAAAAGGCAAGCGAACCAGTCAGTCGAAGTGTTTTTGAGGTAGATTGTGTTCCCCTTTGGGGATTTACATCGGTTTGTGGAAGAAGACCCGAGATGGAAGATGCAGTGGCAACTGTACCTAGGTTTTCAGAACTTCCTGTCCAAATGCTTGTTGGCGACCGAGTTCTTGATGGCTCAAACAAGGCTATAGCTCACCAAACCGTTCATTTTTTTGGGGTTTATGATGGTCATGGTGGCTCTCAGGTTGCAAATTTTTGTCGTGAACGTATGCATTTGGCTTTATCTGAGGAGATAGAACTTGCTAAGCAAGAAATAGCCGTTGGCAATGTTAAGGATAATTGCCAAGAGCTATGGAGAAAGGCATTCACCAACTGTTTTCTTAAAGTTGATGCTGAAATTGGAGGGGGACCTGGTCTTGAGCCTGTTGCGCCAGAAACTGTAGGCTCCACTGCTGTTGTTGCAATTATCTGTGCCTCTCACATTATTGTTGCAAACTGTGGAGACTCAAGAGCAGTTCTTTGTCGTGGGAAAGAGCCAATGGCATTGTCTGTGGATCATAAACCAAACAGAGAAGACGAATATGAAAGGATTGAGGCTGCAGGAGGAAAGGTCATACAGTGGAACGGGCATCGTGTTTTTGGTGTTCTTGCAATGTCGAGATCCATTGGTGATAGATACTTGAAACCATGGATCATCCCAGAGCCAGAAGTGATGTTCCTCCCTCGGGCAAAAGACGACGAATGCCTCGTTCTAGCGAGTGATGGTTTATGGGATGTGATGACCAATGAAGAGGTATGCGACCTGGCTCGAAGACGAATCCTACTTTGGCACAAGAAGAATGGCGTTAGTTTGCCTTCTGAGAGGGGGGTGGGGATCGATCCCGCAGCACAAGCAGCCGCAGAATACCTCTCAAACCGAGCTCTTCAAAAGGGCAGCAAAGACAACATTACGGCGAAACCTGCATTTTCGACAAGTTTTAAAGAAAACAATAGCGTAAACCTCTTCTCCGTCGTTCGAAGAACAATCGAGTTGGAAGCCATTCTCCACCGATTCCTTGGTTCAAGTCAAGCCCGGCGAGATCGGCGCGAGGACAAGAAGCGACTTCGTTGGCCGAGAAATTTATTTCCAAGAACCGCCTCGTCGTTCAGGCCGCTGTTGCTTCGCCGACGGCCATTTGATGGAGTGGTAATATCTCAATCAATGGGAATCAAGAGAGAGAGTAAAAGCTCCGCTTCTGCAACATCGCCGTGTGCTGATTTCAGGGCTGCATATCACAATTGTTTCAATCGATGGTACTCGGAGAAGTTTGTAAAAGGTCATTGGGATGAAGAACCCTGCGTCTCCGAGTGGCAGAAGTACAGAGCTTGCCTCTCTGAGCATTTGGATGATAAGAAGTTGAAGCGTTTCTTGGAAGAGGAAACGATTGTTCATTCTTCCATGAAAGCTGATGGGAGTCAAGAATCAAGATAG 2373 45.09 MDWWVFNHSTPLWICDVEEEKGEIEGEEEEEEEEVSTKGVLKREIDGPIRFPSLPRVASPDLASYFVSYQVSYGWKMVENLMEEMSPAVVVPFRLGNSVCDNPNMATPMDITRLKLMADTAGLLSDSVTKASDDLIEVGSDDCKSSNGEEEVGITKVSGMNDKCEGVPLSVVLSQNNSSWVPADESISHGSEEDDSLSLEGDHIYDSSCSHSVISENSSICGDDFLGSEVSSFEAFDSISNPKDISSVEIAAKANIEETNVESLDSQIASSSSAAASLEEDVGDGLGTEACNNTVLQLPLEKKASEPVSRSVFEVDCVPLWGFTSVCGRRPEMEDAVATVPRFSELPVQMLVGDRVLDGSNKAIAHQTVHFFGVYDGHGGSQVANFCRERMHLALSEEIELAKQEIAVGNVKDNCQELWRKAFTNCFLKVDAEIGGGPGLEPVAPETVGSTAVVAIICASHIIVANCGDSRAVLCRGKEPMALSVDHKPNREDEYERIEAAGGKVIQWNGHRVFGVLAMSRSIGDRYLKPWIIPEPEVMFLPRAKDDECLVLASDGLWDVMTNEEVCDLARRRILLWHKKNGVSLPSERGVGIDPAAQAAAEYLSNRALQKGSKDNITAKPAFSTSFKENNSVNLFSVVRRTIELEAILHRFLGSSQARRDRREDKKRLRWPRNLFPRTASSFRPLLLRRRPFDGVVISQSMGIKRESKSSASATSPCADFRAAYHNCFNRWYSEKFVKGHWDEEPCVSEWQKYRACLSEHLDDKKLKRFLEEETIVHSSMKADGSQESR 790
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22775029 22781686 - ClCG08G009990.1 Cla08g01003 278658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01003 790 ProSiteProfiles Coiled coil-helix-coiled coil-helix (CHCH) domain profile. 715 765 - -
Cla08g01003 790 ProSitePatterns PPM-type phosphatase domain signature. 371 379 IPR000222 GO:0043169
Cla08g01003 790 ProSiteProfiles PPM-type phosphatase domain profile. 320 624 IPR001932 -
Cla08g01003 790 PANTHER ALPHABET, ISOFORM E-RELATED 205 618 - -
Cla08g01003 790 PANTHER PROTEIN PHOSPHATASE 2C 6-RELATED 205 618 - -
Cla08g01003 790 SMART PP2C_4 310 622 IPR001932 -
Cla08g01003 790 CDD PP2Cc 322 619 IPR001932 -
Cla08g01003 790 Pfam Uncharacterised protein family (UPF0203) 713 774 IPR007918 -
Cla08g01003 790 Pfam Protein phosphatase 2C 349 617 IPR001932 -
Cla08g01003 790 Gene3D - 307 623 IPR036457 -
Cla08g01003 790 SUPERFAMILY PP2C-like 315 619 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00958 Cla-Chr5:9583656 Cla08g01003 Cla-Chr8:22775029 1.32E-64 dispersed
Cla07g01318 Cla-Chr7:30357883 Cla08g01003 Cla-Chr8:22775029 1.73E-174 dispersed
Cla08g01003 Cla-Chr8:22775029 Cla05g00953 Cla-Chr5:9494823 1.38E-40 dispersed
Cla11g00638 Cla-Chr11:7319864 Cla08g01003 Cla-Chr8:22775029 7.98E-18 dispersed
Cla08g01003 Cla-Chr8:22775029 Cla03g00118 Cla-Chr3:1202141 6.54E-70 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01003 K14497 - csv:101207918 999.964