Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01004 ATGTCTCGGCTGCGGCATCAACATTCTGAACCTCTTTGCGAAATGTCTCCCTCCTCCTATCCACCCGAAGATGGGATTCCTTTGAACACCACGGCGGTGGCCATTGACAAGGATAAGAACAGCCATCACGCCGTCCGCTGGGCTATTGATCATCTGGTCATTAGCAATCCACTTATCATTCTCATCTACGTTAGGCATAAAGCTAATCAACATCAGGGAGCGAGCGATTCTGAAAATGGTGAAACTGATGCCCAGCAGCTGTTTATTCCTTATCGTGGATATTGTGCTCGTAAAGGGGTTCAGCTGAAGGAGGTTGTTCTTGACGATACTGATATTCCCAAAGCGCTTGTTGACTACGTTCACAAGAATTGCATCAACAATTTTGTAGTTGGAGCTTCAACAAGGAGTGCTTTAGCAAGGAAATTTAAAGGTCCTGATGTTCCAACCAGCATAATAAAAACTGCCCCAGAATTTTGTTCTGTTTATGTAATATCAAAAGGGAAGATAATATCTGCCAGGGCAGCTCTTCGGCCAGTGGCTAATACTGCCACGCCACCAAGACAACCGTCGCCGCTTGGAGTTCAGCCAAATGTTCAACCAGATAGCAGCAACGAACTGGACAATGGAGCCAAAGGGCAACCAGCAAAGGAAGGATGGAAAAGTGCAGGTACAGAGAGAATGCTCGCTGAAAGGAATAGTGGTGCAAAACCAGCAAAAGCGTTGACCCGTGAGAGGCCAAAAACTTCTCCAACTAATATATCAATGGAAAATATAGAGGTTCCAAATCGAGGGTCTAGGTCTTCATTTAGTCGTGATTCGATATCTGATGACAATATGCTGACTGCACAGATGGCCTTTGGTTCAATGGACGTGACTGCTCAAAATTTAGATTTCAGTGGCTCAAATTTGTCAGTGGACTCTGCTTCCACACAATCTACTTTATGTAGTTGCAGTTGCATTGATTTAACATCTCTGCCGACTTATTTGCTACAGCGGGAACTAGAGGCTGAGATGAAAAGATTGAAGCTGGAATTAAAGCAAACCATGGATATGTATAGCTCAGCCTGTAAAGAGGCAATCTCAGCCAAGAACAAGGCGAGAGAACTTAGTCAGTGGAAGCAAGATGAGGCACGTAAGTTCGAGGAAGTCAGGCTAGCTGAAGAGGCTGCTCTCGCTATTGCTGAGATGGAGAAAGCCAAGTGCAAAGCTGCCATTGAAGCAGCAGAGGCAGCACAAAAGCTAGCCGAAAGAGAAGCCCAGAGAAGAAAACAGGCTGAAATGAAAGCCAGACGAGAGGCAGAAGAGAAAAAACGAGCATTGAATGCTCTAGCTCAGAATGACGTCCGATATAGAAAATACACTATAGAGGAGATTGAGGAATCTACTGAAAAGTTCTCTGAAAAATTGAAGATTGGAGAAGGTGGATACGGTCCTGTTTATGGTGGCAAACTTGATCATACAGCTGTTGCGATTAAAGTTTTAAGACCTGACGCTGCTCAAGGACGGAAGCAATTCCAACAAGAGGTGGAGGTCCTCTGTTGTATTAGACATCCAAACATGGTCCTTCTTCTTGGGGCATGCCCCGAGTATGGTTGCTTGGTATATGAGTACATGCATAATGGGAGCTTAGAAGACAGACTTTTCCGGAGAGGGAATACTCCTCCATTATCTTGGAGACGACGATTCAAAATAGCTGCTGAAATTGCAACCGCTCTCCTTTTTCTTCACCAAGCAAAGCCAGAGCCGCTCGTTCATAGGGACCTTAAACCAGCTAACATTCTCCTGGACCGCAATTATGTGAGCAAAATCAGTGATGTTGGCCTGGCCCGATTAGTCCCACCTTCTGTAGCTGATCAAGTCACACAATATCACCTGACTTCAGCAGCTGGCACATTTTGTTACATTGATCCCGAGTACCAACAAACAGGGCAGTTAACGACAAAATCAGATATTTACTCGTTTGGAATAATGTTACTTCAAATTATTACTGCCAAACCTCCAATGGGTTTGGCTCACCATGTGCAAAGGGCTATTGAGAAAGAGAGGTTTGATGAGATGCTGGATCCTACAATTTCAGATTGTCCACTGGAGGAGGCCATAAATTTTGCAAACTTGGCATTGAAGTGCGCTGAACTGAGGAAGAGAGACAGGCCAGATCTTGGAACAGTTATAGTTCCAGAGCTCAACAGGTTAAGAGATATTGGGAGGAGTTCTGACAAACGTGAAAGCCGAAGTAACTTCCCACGCTCTGCTGCATCAAGTTCCAGTTCAAGGGCGCAGTCATCAAATGAGGTCCACAACTTGATTCCAGAGTTAGTTATACTGATGAAGGAAGTTAGAGGCCTGCATATGACAGTTGTGACGGTATACCAAAGGCCGGCTAACCCAGAAGAGGAAAGTTGCTTGATTTAA 2412 44.9 MSRLRHQHSEPLCEMSPSSYPPEDGIPLNTTAVAIDKDKNSHHAVRWAIDHLVISNPLIILIYVRHKANQHQGASDSENGETDAQQLFIPYRGYCARKGVQLKEVVLDDTDIPKALVDYVHKNCINNFVVGASTRSALARKFKGPDVPTSIIKTAPEFCSVYVISKGKIISARAALRPVANTATPPRQPSPLGVQPNVQPDSSNELDNGAKGQPAKEGWKSAGTERMLAERNSGAKPAKALTRERPKTSPTNISMENIEVPNRGSRSSFSRDSISDDNMLTAQMAFGSMDVTAQNLDFSGSNLSVDSASTQSTLCSCSCIDLTSLPTYLLQRELEAEMKRLKLELKQTMDMYSSACKEAISAKNKARELSQWKQDEARKFEEVRLAEEAALAIAEMEKAKCKAAIEAAEAAQKLAEREAQRRKQAEMKARREAEEKKRALNALAQNDVRYRKYTIEEIEESTEKFSEKLKIGEGGYGPVYGGKLDHTAVAIKVLRPDAAQGRKQFQQEVEVLCCIRHPNMVLLLGACPEYGCLVYEYMHNGSLEDRLFRRGNTPPLSWRRRFKIAAEIATALLFLHQAKPEPLVHRDLKPANILLDRNYVSKISDVGLARLVPPSVADQVTQYHLTSAAGTFCYIDPEYQQTGQLTTKSDIYSFGIMLLQIITAKPPMGLAHHVQRAIEKERFDEMLDPTISDCPLEEAINFANLALKCAELRKRDRPDLGTVIVPELNRLRDIGRSSDKRESRSNFPRSAASSSSSRAQSSNEVHNLIPELVILMKEVRGLHMTVVTVYQRPANPEEESCLI 803
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22789988 22793821 + ClCG08G010000.2 Cla08g01004 278659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01004 803 ProSiteProfiles Protein kinase domain profile. 465 728 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla08g01004 803 Pfam Universal stress protein family 33 161 IPR006016 -
Cla08g01004 803 PANTHER KINASE WITH ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE DOMAIN-CONTAINING PROTEIN 30 760 - -
Cla08g01004 803 ProSitePatterns Serine/Threonine protein kinases active-site signature. 583 595 IPR008271 GO:0004672|GO:0006468
Cla08g01004 803 MobiDBLite consensus disorder prediction 194 209 - -
Cla08g01004 803 SUPERFAMILY Protein kinase-like (PK-like) 448 723 IPR011009 -
Cla08g01004 803 MobiDBLite consensus disorder prediction 245 271 - -
Cla08g01004 803 CDD STK_N 30 167 - -
Cla08g01004 803 Gene3D Transferase(Phosphotransferase) domain 1 538 753 - -
Cla08g01004 803 PANTHER OS02G0152300 PROTEIN 30 760 - -
Cla08g01004 803 Gene3D HUPs 28 166 IPR014729 -
Cla08g01004 803 Coils Coil 391 446 - -
Cla08g01004 803 SMART serkin_6 465 728 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla08g01004 803 CDD STKc_IRAK 471 731 - -
Cla08g01004 803 Gene3D Phosphorylase Kinase; domain 1 434 537 - -
Cla08g01004 803 MobiDBLite consensus disorder prediction 747 762 - -
Cla08g01004 803 Pfam Protein tyrosine and serine/threonine kinase 469 723 IPR001245 GO:0004672|GO:0006468
Cla08g01004 803 MobiDBLite consensus disorder prediction 735 762 - -
Cla08g01004 803 MobiDBLite consensus disorder prediction 181 271 - -
Cla08g01004 803 Coils Coil 331 351 - -
Cla08g01004 803 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 31 163 - -
Cla08g01004 803 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g01004 Cla-Chr8:22789988 Cla08g01256 Cla-Chr8:25473806 0 dispersed
Cla08g01004 Cla-Chr8:22789988 Cla09g00073 Cla-Chr9:688045 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80747 PF07714 PK_Tyr_Ser-Thr 2.20E-41 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01004 - - csv:101203326 1215.29