Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla08g01010 | ATGCCCAAAGAACCCCCGCCACAATTGAGAAAGACCCACTCATATTGTAACGAAAGCCATCTTCCGGCATCGGATTATTGCAAGTTCATTCAGATTCCGGATATGGAGGAAGAGGAAACCGGAGAGGCTATCCGGCCGGAATTTCCAACGGGGCGAGTGAAGAAGATAATGAAGCTCGACAAGGATATTGGCAAAGTGAATTCAGAAGCCCTGTTTCTAGTCTCATGCGCCACCGAGCTCTTCCTCAAGCTTCTCGCTGAAAAATCTGCAGAAGTCGCCGCTGAGAAGAAACGGAAAACCGTGAAGCTTGAACACATCCGAATCGCCGCCAAAAGGCATCGATCGATTAGTGATTTTCTACTCGATTCGCTTCCTCTTCCTTCTCAGCGGTCGGATGCGCCGGCAAAGGACGAGAATCGCACTCGCACTGTCGTTGATAAAGTGGCTCCTGAAGGAACCCGTCGAATCGATGATTTCTTTCGCCGGCCAGCAAAGACAACGTCGGCGGAGACCAACGAGTCATAG | 525 | 50.67 | MPKEPPPQLRKTHSYCNESHLPASDYCKFIQIPDMEEEETGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRIAAKRHRSISDFLLDSLPLPSQRSDAPAKDENRTRTVVDKVAPEGTRRIDDFFRRPAKTTSAETNES | 174 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 22835368 | 22836006 | + | ClCG08G010070.2 | Cla08g01010 | 278665 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla08g01010 | 174 | MobiDBLite | consensus disorder prediction | 155 | 174 | - | - | |
Cla08g01010 | 174 | PANTHER | HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED | 29 | 163 | - | - | |
Cla08g01010 | 174 | PANTHER | NUCLEAR FACTOR Y, SUBUNIT C13 | 29 | 163 | - | - | |
Cla08g01010 | 174 | MobiDBLite | consensus disorder prediction | 125 | 148 | - | - | |
Cla08g01010 | 174 | Gene3D | Histone, subunit A | 12 | 125 | IPR009072 | GO:0046982 | |
Cla08g01010 | 174 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 47 | 109 | IPR003958 | - | |
Cla08g01010 | 174 | SUPERFAMILY | Histone-fold | 46 | 125 | IPR009072 | GO:0046982 | |
Cla08g01010 | 174 | MobiDBLite | consensus disorder prediction | 133 | 148 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla02g02053 | Cla-Chr2:35585897 | Cla08g01010 | Cla-Chr8:22835368 | 6.88E-07 | dispersed | |
Cla08g01010 | Cla-Chr8:22835368 | Cla11g01280 | Cla-Chr11:26323251 | 1.39E-10 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
61564 | PF00808 | CBFD_NFYB_HMF | 2.20E-19 | CL0012 | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla08g01010 | - | - | cmo:103488501 | 234.958 |