Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01010 ATGCCCAAAGAACCCCCGCCACAATTGAGAAAGACCCACTCATATTGTAACGAAAGCCATCTTCCGGCATCGGATTATTGCAAGTTCATTCAGATTCCGGATATGGAGGAAGAGGAAACCGGAGAGGCTATCCGGCCGGAATTTCCAACGGGGCGAGTGAAGAAGATAATGAAGCTCGACAAGGATATTGGCAAAGTGAATTCAGAAGCCCTGTTTCTAGTCTCATGCGCCACCGAGCTCTTCCTCAAGCTTCTCGCTGAAAAATCTGCAGAAGTCGCCGCTGAGAAGAAACGGAAAACCGTGAAGCTTGAACACATCCGAATCGCCGCCAAAAGGCATCGATCGATTAGTGATTTTCTACTCGATTCGCTTCCTCTTCCTTCTCAGCGGTCGGATGCGCCGGCAAAGGACGAGAATCGCACTCGCACTGTCGTTGATAAAGTGGCTCCTGAAGGAACCCGTCGAATCGATGATTTCTTTCGCCGGCCAGCAAAGACAACGTCGGCGGAGACCAACGAGTCATAG 525 50.67 MPKEPPPQLRKTHSYCNESHLPASDYCKFIQIPDMEEEETGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRIAAKRHRSISDFLLDSLPLPSQRSDAPAKDENRTRTVVDKVAPEGTRRIDDFFRRPAKTTSAETNES 174
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22835368 22836006 + ClCG08G010070.2 Cla08g01010 278665

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01010 174 MobiDBLite consensus disorder prediction 155 174 - -
Cla08g01010 174 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 29 163 - -
Cla08g01010 174 PANTHER NUCLEAR FACTOR Y, SUBUNIT C13 29 163 - -
Cla08g01010 174 MobiDBLite consensus disorder prediction 125 148 - -
Cla08g01010 174 Gene3D Histone, subunit A 12 125 IPR009072 GO:0046982
Cla08g01010 174 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 47 109 IPR003958 -
Cla08g01010 174 SUPERFAMILY Histone-fold 46 125 IPR009072 GO:0046982
Cla08g01010 174 MobiDBLite consensus disorder prediction 133 148 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01010 - - - cmo:103488501 234.958
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g02053 Cla-Chr2:35585897 Cla08g01010 Cla-Chr8:22835368 6.88E-07 dispersed
Cla08g01010 Cla-Chr8:22835368 Cla11g01280 Cla-Chr11:26323251 1.39E-10 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla06g01745 . 35 219 CCAAT-HAP5 Transcription Factor Family AT3G48590 89.5 9.3e-89 323.6
Cla09g01320 . 82 225 CCAAT-HAP5 Transcription Factor Family AT3G48590 69.4 2.2e-53 206.1
Cla03g01621 . 114 282 CCAAT-HAP5 Transcription Factor Family AT3G48590 65.1 1.4e-52 203.4
Cla03g01621 . 33 292 CCAAT-HAP5 Transcription Factor Family AT1G08970 55.6 2.3e-55 212.6
Cla09g01320 . 28 180 CCAAT-HAP5 Transcription Factor Family AT1G08970 70.6 1.2e-48 190.3
Cla06g01745 . 34 133 CCAAT-HAP5 Transcription Factor Family AT1G08970 83.0 7.7e-43 171.0
Cla03g01621 . 55 282 CCAAT-HAP5 Transcription Factor Family AT1G54830 61.0 2.4e-62 235.7
Cla09g01320 . 28 224 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.1 2.9e-52 202.2
Cla06g01745 . 34 193 CCAAT-HAP5 Transcription Factor Family AT1G54830 67.3 1.9e-51 199.5
Cla06g01745 . 34 192 CCAAT-HAP5 Transcription Factor Family AT5G50480 54.7 3.8e-38 155.2
Cla06g01745 . 35 219 CCAAT-HAP5 Transcription Factor Family AT5G63470 81.4 7.7e-81 297.4
Cla09g01320 . 82 233 CCAAT-HAP5 Transcription Factor Family AT5G63470 63.9 2.0e-49 193.0
Cla03g01621 . 114 282 CCAAT-HAP5 Transcription Factor Family AT5G63470 62.6 5.9e-49 191.4
Cla09g01320 . 46 213 CCAAT-HAP5 Transcription Factor Family AT1G56170 82.2 2.8e-65 245.4
Cla03g01621 . 86 250 CCAAT-HAP5 Transcription Factor Family AT1G56170 67.2 3.3e-50 195.3
Cla06g01745 . 35 158 CCAAT-HAP5 Transcription Factor Family AT1G56170 74.8 4.3e-50 194.9
Cla08g01010 . 35 169 CCAAT-HAP5 Transcription Factor Family AT5G43250 65.5 9.3e-38 153.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009175 3 1 1 1 0 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 0 1 1 1 1 0 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61564 PF00808 CBFD_NFYB_HMF 2.20E-19 CL0012 Cla TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla08g01010 Cla_Chr08 FPKM 0.0 2.054785 0.069779 0.62626 0.0 0.0 0.0 0.0 0.0 0.0