Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01030 ATGGCTGATTCACCTCCTCCCCCTCCCTTCTCCACCGCCGATTCCTCCACTAATTCAACCGACGCTCTTTTCTTCTTCCCTCCCGATTCCGATTCCACCATCCTTACCGAATTCGGATGGAATTTCCACTCTCTTCAACCTCAACAACCTTCTCGATTCCAATCTCAACGGATCGACGCCGATTTGCCTCCAACTTCCACTCCGGTAATCGATGACGCTGCCGGATTACAGAGCCCTGACGCTCCTCTTCCACTCGCCTCTAATCCTTCTTTGTCTTCTAGCTCTAGCGGAGAGCCGACGGAGAAACAGCCTGAGATTATTCCGCGGAAGGTCAAAAAGAAGGGGCAGAAGCGAATTCGGCAGCCACGATTTGCATTCATGACCAAAAGCGAAGTCGATCATCTTGAAGATGGCTACCGGTGGAGGAAATATGGACAAAAGGCTGTCAAGAACAGTCCATTCCCTAGGAGTTACTACAGGTGCACAAACAGCAAATGCACAGTGAAGAAAAGAGTAGAACGGTCTTGTGAAGATCCAAGCATTGTGATAACAACATATGAAGGACAACACTGTCATCACACCGTTGGATTCCCTCGAGGTGGATTAAACATAGCTCATGAAGCTGCTTTTGGGTCTCAATTTTCACCTCAAATCCCACAGTTTTTTTACCCTGATCATCAAACTCACTCACCACCCACAACTAACATTAACCCTCCCCCCACTCCCAATGACCAGCCACACGATTTGGCTCCATCATCATCCTCCAATGCACTATCCTTAGAACAACAAGATCCAACAAACTCAAACCTCCAAGTTCCTTCCGACGAAGGCTTGCTCGGCGCTATCGTCCCACCCGCCATGATGCGTAGAACATAA 876 48.74 MADSPPPPPFSTADSSTNSTDALFFFPPDSDSTILTEFGWNFHSLQPQQPSRFQSQRIDADLPPTSTPVIDDAAGLQSPDAPLPLASNPSLSSSSSGEPTEKQPEIIPRKVKKKGQKRIRQPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSCEDPSIVITTYEGQHCHHTVGFPRGGLNIAHEAAFGSQFSPQIPQFFYPDHQTHSPPTTNINPPPTPNDQPHDLAPSSSSNALSLEQQDPTNSNLQVPSDEGLLGAIVPPAMMRRT 291
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23025947 23031270 - ClCG08G010270.1 Cla08g01030 278685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01030 291 MobiDBLite consensus disorder prediction 83 101 - -
Cla08g01030 291 ProSiteProfiles WRKY domain profile. 130 195 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla08g01030 291 Gene3D WRKY domain 122 188 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cla08g01030 291 MobiDBLite consensus disorder prediction 247 274 - -
Cla08g01030 291 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 18 208 IPR044810 GO:0003700
Cla08g01030 291 MobiDBLite consensus disorder prediction 47 118 - -
Cla08g01030 291 Pfam WRKY DNA -binding domain 136 192 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla08g01030 291 MobiDBLite consensus disorder prediction 1 26 - -
Cla08g01030 291 MobiDBLite consensus disorder prediction 220 278 - -
Cla08g01030 291 SMART WRKY_cls 135 194 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla08g01030 291 MobiDBLite consensus disorder prediction 47 62 - -
Cla08g01030 291 PANTHER WRKY TRANSCRIPTION FACTOR 57-RELATED 18 208 - -
Cla08g01030 291 SUPERFAMILY WRKY DNA-binding domain 127 193 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01558 Cla-Chr1:30233134 Cla08g01030 Cla-Chr8:23025947 9.35E-35 dispersed
Cla02g00099 Cla-Chr2:1107478 Cla08g01030 Cla-Chr8:23025947 7.33E-36 dispersed
Cla04g00795 Cla-Chr4:23000331 Cla08g01030 Cla-Chr8:23025947 1.14E-24 dispersed
Cla05g00716 Cla-Chr5:6696711 Cla08g01030 Cla-Chr8:23025947 1.00E-45 dispersed
Cla06g00419 Cla-Chr6:5093567 Cla08g01030 Cla-Chr8:23025947 2.65E-49 dispersed
Cla08g01030 Cla-Chr8:23025947 Cla10g01103 Cla-Chr10:25306121 1.87E-39 dispersed
Cla08g01030 Cla-Chr8:23025947 Cla09g02191 Cla-Chr9:39506007 3.24E-48 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61565 PF03106 WRKY 8.80E-25 CL0274 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01030 - - cmo:103488478 387.882