Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01046 ATGAATTTGGAGCAAACCTTCCGGCGACGATCGGATCTGAGGCGAACTTCAGAGTTCAAGAGGGAACGAAGAAATGAGTGGGCTGGTGTACTCATAACCGAAAACATTGGAAAGAATCCCATCAGGTCTCATCTGCTCAGTATCAGTCCACCTCTCACCTGCCTGCTAAATCTGGAATTTCTTGTAGATTTTCACTTTCCCATTGATCCTTTTTTTATTTCTGCATCTGGGTCTTTTGGTTATGGCGTTCCAAGTGTTTTCATCCACACAATTGCTTTGAAAATCGGTTACTTCCCTTTCATTTCTGTTGCTTTATCTGGGTTTCCTTTCGTTTTACCGTTCAGTAGAAGATTTATGTTTGTAGGCATTGGCTGCTTCAATTTTCGACCCTCTGCTGCTAATAGCAGGGGACTACGATCCATGGATGTCTCAAGAGGGGTAAAGAAGAGAGGCCATGGAAATCGTTCTTGGATAAAGATTGATCAAGAAGGGAACTCAGAGGTTTTGGAACTTGAGAAGGCTACAATAATGAGGCGTTGTTCTTTACCTTCTAGAGATATGCGACTTTTGGATCCTCTCTTCCTTTGTCCATCCACAATTCTTGGAAGGGAGAAGGCAATTGTTGTCAGTCTTGAGCAAATTCGGTGTATAATCACATCTGATGAGGTTATTTTAATGAACTCCTTAGATGGATGTGCTGCACAGTACAAGTCAGAACTATGCAAGCGTCTCAAAGCAAATAAAGATCAATCAGATGATTTGCCCTTTGAATTTAGGGCACTGGAGCTGGCGCTGGAACTTACTTGCTCACTTCTTGACACTCAGGTGAAGGGGATGGAAATGGAGATATACCCTCTACTGGATGATTTAGCATCTTCAATAAACACCCTTAATCTCGAAAGAGTTCGAAGATTTAAAGGCAACCTTCTGACCTTGACTCAACAAGTGCAAAAGGTGCGTGATGAAATTGAACATCTGATGGATGATGATGGGGATATGGCTGAGATGTATCTGACACAGAAAAAACAAAAATTGGAGGCGAACATCCGAAGTAACTTGTATTTGGAAGCTAACTTCTTTGGGAAACAGCCACCAAAATCAGCTCCTGTTTCGCCAGTGGGTTCTGCCAATGGAACTTATAAATTACAAAGGGCTTTTAGCAGTATTGTGAACTCAAGCAGCATGATGAGTTCATCGACCAGTGGAGATAACATCGAACAATTGGAGATGCTGCTCGAAGCATACTTTGTGGTCATTGACGACATGCTCAGTAAATTGTTATCGCTCAAAGAGTCTATAGATGACACAGAAGATCTGATCAACATTAAACTGGGCAACGTTCAGAACCAGCTGATACAATTTCAGTTGCTTTTTACTGCTGCTACATTCTTGGCTACAATGTTTGCGGCTTTAACAGCGGTTTTTGGCATGAATTTTGCCGATGATGTCTTCGAGCATCCGACTTCTTTCCAGTTGATAGTTTACTTGACCTTGATTGCCTGTGGCCTTGTGTATTTCGGTTTTCTATTCTATTTTAGGTACAAGAAAATATTCCCACTGTAA 1563 41.65 MNLEQTFRRRSDLRRTSEFKRERRNEWAGVLITENIGKNPIRSHLLSISPPLTCLLNLEFLVDFHFPIDPFFISASGSFGYGVPSVFIHTIALKIGYFPFISVALSGFPFVLPFSRRFMFVGIGCFNFRPSAANSRGLRSMDVSRGVKKRGHGNRSWIKIDQEGNSEVLELEKATIMRRCSLPSRDMRLLDPLFLCPSTILGREKAIVVSLEQIRCIITSDEVILMNSLDGCAAQYKSELCKRLKANKDQSDDLPFEFRALELALELTCSLLDTQVKGMEMEIYPLLDDLASSINTLNLERVRRFKGNLLTLTQQVQKVRDEIEHLMDDDGDMAEMYLTQKKQKLEANIRSNLYLEANFFGKQPPKSAPVSPVGSANGTYKLQRAFSSIVNSSSMMSSSTSGDNIEQLEMLLEAYFVVIDDMLSKLLSLKESIDDTEDLINIKLGNVQNQLIQFQLLFTAATFLATMFAALTAVFGMNFADDVFEHPTSFQLIVYLTLIACGLVYFGFLFYFRYKKIFPL 520
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23142915 23148689 - ClCG08G010430.1 Cla08g01046 278701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01046 520 Gene3D - 142 228 - -
Cla08g01046 520 Gene3D Magnesium transport protein CorA, transmembrane region 231 451 - -
Cla08g01046 520 PANTHER MAGNESIUM TRANSPORTER MRS2-5 142 520 - -
Cla08g01046 520 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 142 520 IPR039204 -
Cla08g01046 520 Coils Coil 309 329 - -
Cla08g01046 520 CDD Mrs2_Mfm1p-like 157 517 IPR039204 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g01046 Cla-Chr8:23142915 Cla10g01225 Cla-Chr10:26930061 1.88E-69 dispersed
Cla08g01046 Cla-Chr8:23142915 Cla06g00628 Cla-Chr6:7704903 9.13E-77 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01046 K16075 - csv:101220835 657.907