Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla08g01050 | ATGTCATCACAAACCTTCAACTCTCTTCTTCTTTATTTCCCCATTTCCATTTCCCAAAGCTTCGAAGCTTTTCTTCTTACCCTTTTTCTCCTCTCCATTTTCGCCTTCTTCTTTCATCCCGGTGGCTTCGCTTGGGCCGTTTCCAAGTTCAAAACCACCGCCTCCACCGCCATCCCTGGCCCTTCCGGCCTCCCATTCATCGGGCTTCTCCATGTCTTCACTCTTTCAACTCCTCACAAAGCCCTCTCTGCCCTTGCTAATCGATTCAAAGCATACCCATTAATGGCTTTCTCTGTTGGGTTAACTAGATTTGTGATTTCTAGTAATCCTGATGTTGCTAAAGAGATTCTTAACAGCCCTGCCTTTGCTGATAGACCCGTGAAAGAGTCTGCTTATGAACTTCTTTTCAACAGAGCAATGGGGTTTGCTCCTTATGGTGAGTATTGGAGGAATTTGAGAAGGATTTCAGCTACTTATATGTTTAGTCCTAAGAGAATAGCTGGGTTTGAAGGGTTTAGGAAAGAAGTTGGGGTTAAAATGGTTAGGGAAATTGAGAAATCTATGGTTTTAAAAGGGGATGTGAGGGTTAAAGAGATTCTTCATTTTGGGTCTTTGAATAATGTTATGATGACTGTTTTTGGGAAATGTTATGAGTTTTGTAATGGGGATAGAGATGGGGTTGAGCTTGAAGAGTTGGTTAAAGAAGGGTATGATTTGCTTGGGATTTTCAATTGGAGTGACCATTTTCCTTTATTGGGTTTCTTGGATTTACAAGGTGTGAGGAAAAGATGTAGGTGTTTGGCTTCTAAAGTGAATGTATTTGTGGGAAAAATCATCGAGGAACATAGAATGAAAAGGGAAATCAAGGGATATCATCAACAAGAACATAACAAAGACTTTGTTGATGTTCTGCTTGATTTGGAGAAAGATGATAAACTCTCAGATTCTGACATGATTGCTGTTCTTTGGGAAATGATATTTAGAGGAACTGACACAGTAGCCATACTTTTGGAATGGATTTTAGCAAGAATGGTGATACACCAAGATATCCAAACCAAAGCCCAAAATGAAATTGATTCAGTAATAGGCAAGAAATGGAGAGCCATTTCAGATACTGATATCCAAAACCTTCCATATCTTCAAGCCATTGTGAAGGAATGTCTAAGAATGCACCCACCAGGACCACTTCTGTCATGGGCAAGGCTAGCTGTGGCGGATGTGCACGTCGATGGGAGAGTGATACCGGCGGGGACGACGGCGATGGTGAACATGTGGGCAATAACTCATAATGAAAAAGTATGGAGAGATGCAGAGAAGTTTGATCCAAATAGATTCATAGAAGAGGAAATTAGTGTAATGGGAAGTGATTTGAGATTGGCTCCATTTGGGGCAGGGAGAAGAGTTTGCCCTGGAAAAGCAATGGGATTGGCTACTGTCCATCTCTGGTTGGCTCAGTTGCTTCAAGCTTACAAATGGATGCCTTGTTCTGAAGAAGCCATTAATGGTGTTGACCTGTCAGAATGCCTTAAACTCTCTCTGGAAATGAAAACTCCATTGGTTTGCAGAGCTGTTCCCAGGGCTGGTTGGGGAGAGGACTGA | 1599 | 42.09 | MSSQTFNSLLLYFPISISQSFEAFLLTLFLLSIFAFFFHPGGFAWAVSKFKTTASTAIPGPSGLPFIGLLHVFTLSTPHKALSALANRFKAYPLMAFSVGLTRFVISSNPDVAKEILNSPAFADRPVKESAYELLFNRAMGFAPYGEYWRNLRRISATYMFSPKRIAGFEGFRKEVGVKMVREIEKSMVLKGDVRVKEILHFGSLNNVMMTVFGKCYEFCNGDRDGVELEELVKEGYDLLGIFNWSDHFPLLGFLDLQGVRKRCRCLASKVNVFVGKIIEEHRMKREIKGYHQQEHNKDFVDVLLDLEKDDKLSDSDMIAVLWEMIFRGTDTVAILLEWILARMVIHQDIQTKAQNEIDSVIGKKWRAISDTDIQNLPYLQAIVKECLRMHPPGPLLSWARLAVADVHVDGRVIPAGTTAMVNMWAITHNEKVWRDAEKFDPNRFIEEEISVMGSDLRLAPFGAGRRVCPGKAMGLATVHLWLAQLLQAYKWMPCSEEAINGVDLSECLKLSLEMKTPLVCRAVPRAGWGED | 532 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 23178388 | 23180376 | - | ClCG08G010500.1 | Cla08g01050 | 278705 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla08g01050 | 532 | Gene3D | Cytochrome P450 | 46 | 522 | IPR036396 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Cla08g01050 | 532 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 462 | 471 | IPR017972 | GO:0005506|GO:0016705 | |
| Cla08g01050 | 532 | SUPERFAMILY | Cytochrome P450 | 58 | 526 | IPR036396 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Cla08g01050 | 532 | PRINTS | E-class P450 group I signature | 317 | 334 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Cla08g01050 | 532 | PRINTS | E-class P450 group I signature | 337 | 363 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Cla08g01050 | 532 | PRINTS | E-class P450 group I signature | 381 | 399 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Cla08g01050 | 532 | PRINTS | E-class P450 group I signature | 423 | 447 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Cla08g01050 | 532 | PRINTS | E-class P450 group I signature | 459 | 469 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Cla08g01050 | 532 | PRINTS | E-class P450 group I signature | 469 | 492 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Cla08g01050 | 532 | PANTHER | CYTOCHROME P450 78A7-RELATED | 9 | 526 | - | - | |
| Cla08g01050 | 532 | Pfam | Cytochrome P450 | 59 | 504 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Cla08g01050 | 532 | PRINTS | P450 superfamily signature | 328 | 345 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Cla08g01050 | 532 | PRINTS | P450 superfamily signature | 382 | 393 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Cla08g01050 | 532 | PRINTS | P450 superfamily signature | 460 | 469 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Cla08g01050 | 532 | PRINTS | P450 superfamily signature | 469 | 480 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Cla08g01050 | 532 | PANTHER | CYTOCHROME P450 78A5 | 9 | 526 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla02g00092 | Cla-Chr2:1006628 | Cla08g01050 | Cla-Chr8:23178388 | 9.67E-167 | dispersed | |
| Cla04g01145 | Cla-Chr4:26653420 | Cla08g01050 | Cla-Chr8:23178388 | 0 | dispersed | |
| Cla06g00261 | Cla-Chr6:3368947 | Cla08g01050 | Cla-Chr8:23178388 | 0 | dispersed | |
| Cla08g01050 | Cla-Chr8:23178388 | Cla11g01341 | Cla-Chr11:26865856 | 0 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla08g01050 | K20619 | - | csv:101221468 | 979.548 |