Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01053 ATGGGAAGAGGGAGAGTAGAGCTGAAGAAGATAGAGAACAAAATAAATAGACAAGTTACCTTCACAAAAAGAAGAAATGGACTTCTTAAAAAGGCTTATGAGCTCTCCATTTTGTGTGATGCTGAGGTTGCATTGATCATCTTCTCCACTCGTGGCAAACTCTATGAATTCTCAAGCTCTTCCAGTATAGCCAAGACCCTGGAGAGGTACGAAAGGCATAGCTATGGTGCATTGGAAGCCTCCCACCCTCCAAAGGACACTGAGAGATGGTACCAAGAGTATTTGAAGCTGAAAGCAGAAGTAGAAGCTTTACAGCATTCACAGAGACGATTTCTTGGAGAAGAATTGAATGATTTGGAGACTAAGGAACTCGACCAACTAGAAATTCAATTGGAAATGTCTCTAAAGCAAATCAGATCTACTAAGAGCCAAACTATGTTTGATCAGTTGTCTGATCTCCAGAAAAAGGAAGATATGCTGCTGGAAACAAATCAAGCTTTGAGGAAGAAGTTGGAGGAAAGTAGTTCTTCTCTTCATACACCATGGGATTCTTCACCCAACAATTTGCAATACTGCAGACAACCTGAAGACTTTCTTCAACGCAATAATAATATTATTGCATTGGAAAATAGTTACAATCCAGCAGAAGTTTCAAACCAAGAAAATGGTGTAAACTCTGGGCCAAATGGTAATGGGTTGTCTTCACAATGGATGTTGCTTTGA 723 39.83 MGRGRVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIIFSTRGKLYEFSSSSSIAKTLERYERHSYGALEASHPPKDTERWYQEYLKLKAEVEALQHSQRRFLGEELNDLETKELDQLEIQLEMSLKQIRSTKSQTMFDQLSDLQKKEDMLLETNQALRKKLEESSSSLHTPWDSSPNNLQYCRQPEDFLQRNNNIIALENSYNPAEVSNQENGVNSGPNGNGLSSQWMLL 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23220342 23226151 + ClCG08G010530.2 Cla08g01053 278708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01053 240 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cla08g01053 240 Coils Coil 117 144 - -
Cla08g01053 240 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Cla08g01053 240 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cla08g01053 240 SUPERFAMILY SRF-like 2 83 IPR036879 GO:0003677|GO:0046983
Cla08g01053 240 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cla08g01053 240 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Cla08g01053 240 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cla08g01053 240 MobiDBLite consensus disorder prediction 216 240 - -
Cla08g01053 240 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cla08g01053 240 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cla08g01053 240 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cla08g01053 240 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cla08g01053 240 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 227 - -
Cla08g01053 240 Coils Coil 150 173 - -
Cla08g01053 240 Pfam K-box region 85 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cla08g01053 240 PANTHER DEVELOPMENTAL PROTEIN SEPALLATA 1 1 227 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g01523 Cla-Chr7:32406091 Cla08g01053 Cla-Chr8:23220342 2.40E-88 dispersed
Cla08g00049 Cla-Chr8:1269197 Cla08g01053 Cla-Chr8:23220342 4.60E-36 dispersed
Cla08g01053 Cla-Chr8:23220342 Cla08g01054 Cla-Chr8:23240146 2.70E-48 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61566 PF01486 K-box 2.50E-27 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01053 K09264 - csv:101220998 416.772