Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01054 ATGGGAAGAGGTAGGGTTCAGTTGAAAAGAATTGAAAACAAAATAAACAGGCAAGTTACTTTCTCCAAAAGGAAAGCTGGATTGCTGAAGAAGGCTCATGAAATCTCTGTTCTTTGTGATGCTGAAGTTGCTTTGATTGTTTTCTCCCACAAAGGAAAGCTCTTTGAATACTCCTCTGATTCCAGCATGGAGAAAATACTTGAACGATATGAGAGATATTCTTACGTGGGAAGGCAGCAACTTGCAGCTTCTGAATCTGAATTTTCCCATGAAAATTGGACTCTCGAATACTACAGACTCAAGTCTAAAGTCGAACTTTTACAAAGAAACAACAGTCATTATATGGGAGAAGATTTGGATTCATTGAGTGTTAAAGAACTGCAAAACTTGGAGCAACAAATTGACACTGCACTTAAACATGTTCGATCAAGAAAAGAAAGAGCAATTCAGGAGCAAAATGCCTTATTGGCTAAGCAGAGTGTAGCAATGGCACAACAGGCAGAATGGGAGCAGCAGCAACACCATGGTTACAATGCCTTATCTTTTTTATTCCCACCACCTCCTCATCCCTCTCTAAACATTGGTTCACGTGGGCCGTCTTTCAATTTGGGCCTTGTTGAGCCGAATTTAAATGCGGCCCAAATCACCAAATGGAAAACGGGCCGTTGGAATCGTGGAAGCCCAATTGACAGGTTAAGCCAACTATCCGTTCGTAGCTCCAGTAACAATGATAAGAATAGCAAGAAGAAGAAGAAGAAGAGTTCCGGGCCGAAAGCCTTGACGATGAAGGTCAGCGCTCCGAAGGCGAATCCATTCGAAAGCATTTGGTCTCGTAGGAAATTTGATGTCCTTGGGAAGAAACGTAAGGGAGAAGAGCGTCGTATTGGCCTTGCTCGTTCCCTCGCCATTGAAAAGAGGAAAAAGACGCTATTGAAGGAGTACCAACAAAGTCGCAAATCTACAGAATTTTCCGATAAGCGAATTGGAGAATGGGACGAAGAGCTTGGGGAGTTCGATAAGGCTATTTTACGTTCGCAGCGCGAACTGAAGCGAAAACTGAATAAGAGCAGCAAATATAACTTATCTGATGGAGAAGAAGATGATTATTTTGGAACCCAAAATCTTGGCGCGTTACCTGCGAACGACGATTTTGAGGACGAAATAATGCCGGATGACGATGACGATGCGGCAGCTGCTGAAACCAAGAAGGGGGCTCATCGTGATGCACCCTATCAACAAAAAGGTCGTCTTTTTGAAGGAGAAGAAAATAAACGCAAAAGTAAGAAGGAAGTCATGGATGAGGTTATTGCAAAGAGCAAGTTTTTCAAGGCACAAAAAGCAAAGGATAAGGAAGAAAATGAACAACTTGTTGAAGAATTGGACAAGAAGTTTGAGTCCTTGGTCCAGTCTGAGGCATTATTATCTCTCACTGGTTCTGGTAACTCAAATGCCTTGAAGGCTCTTGTTCAAAAGAGTATTTCAAATGAGCATTTAAAGAAGGATACTTTGCCTGCTGCTGGAAAAAATGAAAATTTTAATCAGGAAAAACCTGATGCTTTTGACAGGCTTGTTAAAGAGATGGCAATGGAAATACGTGCACGCCCCTCTGACAGGACAAAGACACCCGAAGAGATTGCCCAGGAGGAGCGAGAGCGTCTTGAGCTATTAGAGGAGGAAAGACAGAAAAGGATGCTTGCACCAGATAACTCTAGTGATGAAGAAGATGATGATTCTGAAAATAGTTCTGTAGGGAAACAGAAATATATCTCTGGGGACGATCTTGGTGACTCATTTACACTTGATGATGAGCGCAGTCATAAGAAGGGTTGGGTCGATGAGATTCTTGGAAGGAAGGATGCTGATGGCACTAAAAGTGAAGATGATGATTCTGCAGAAGATTCTGACAGTAGTCAAGATGATGTGGATGGGGATTCTGATGATGAATCAGAGGAAGATGATAGCACTCGTGGAGTGAAGCATTCTTTGAAGGATTGGGAACAGAGTGATGATGACATTCTTGACACTAATTCAGAAGAGGATGATGAAGCAAGTAAAGAGGAAAAAGAGCAGGATGAGGATCATCCTAAAGAGAAAGTGAATCACAAAGGCCCTAAAAAGGCATACAAGAGCACCATTGCTAAAAGTAGTAAAAGCGATGGAATCTCTGAGGATACTAAGAAATTAGACAGGGACACAAAGCGTCAAAGTAAACCGGAACTTCCTTATATAATTGATGCACCAGAGAGTTTCGACCAATTTTTGTCATTGCTGGCCGATTGTTCAAATAGTGATATAATCTTGATCATTGGCCGAATTCGGGCAAGTAATGCCATCCAGTTAACAGAAAAAAATCTGGAAAAAATGCAGAAATTCTATGGTATCCTCTTGCAATATTTTGCTGTCTCGGCAAATAAGAAGCCATTGAATGTGGAACTACTCAATTTACTTTTCAAGCCATTGATGGAAATGAGTATGGAGATTCCTTTCTATGCTGCAACATGTGCTAGGACAAGGATATCCCACATTCATCAACAATTCTGTGTTCAGAATAAGAATCCAGAGAATAGCTCCTGGCCTTCTTCCAAAACTCTGATCCTCTTGAGGCTGTGGTCAATGATATTTCCGTGCTCTGACTACAATCATGTGGTCATTACGCCAGCAATATTGTTGATGTGCGAATATTTGATGCGTTGCCCCATTGTGACGGGTCGGGATATTGCAATAGGGGCTTTCTTATGTTCTCTGCTGCTCTATGTCAGCAGACAATCTTCGAAGTTCTGTCCTGAAGCAATAAACTTCCTCCAGACTTTGTTGGCCGCGGCTGTTAGTGGGCCATCATCCTCTCAAAATTCTCAGATTTGTCATCTAGTGGATTTGCAAGCACTTGGACAGTTACTGCGTATACAGAATCCTACAAACGAGGTTACCCCCCTGAACTTCTTCCTCATAATGGACTTGACTGAAGATTCTTCTGTTTTTAGCTCCGACAATTTCAGGGCTGGGTTGCTGTCAACAGTTACCGAAACTCTTGATGGATTCGTTAATATATATGGTCATTTGAAATCCTTCCCCGAAATCTTCTTGCCGATATCGACAATTTTACATGAATTGGCAAAGCAAGAGAACATGCCAGTTGAACTACAGGATAAATTCAGAAAAGTAGCTAAAGCGATCGAAGCCAAAACGGAGGAGCATTATATTGGGCGGGAACCTCTTAGAATGAGGAAGCAAAAGGCTGTACCCATCAAATTACTAAACCCAAAATTTGAGGAGAACTTTGTTAGGGGTAGAGACTATGATCCAGATCGAGAACGAGCTGAAAGAAGAAAGATGCAGAAACTTTTAAAACGTGAAACTAAAGGAGCAGCCCGTGAACTACGTAAGGATAACCATTTCTTGGCAGAAGTGAAAGCAAGAGATAAGGCACTGCAGGAAGAAGAAAAGGCAGAAAAGTACAAAAAAGCAAGAGCTTTCCTAGAAGCACAAGAGCACGCATTCAAATCTGGACAATTGGGAAACGGAAGAAAGAGAAGGAAATGA 3540 41.81 MGRGRVQLKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYSSDSSMEKILERYERYSYVGRQQLAASESEFSHENWTLEYYRLKSKVELLQRNNSHYMGEDLDSLSVKELQNLEQQIDTALKHVRSRKERAIQEQNALLAKQSVAMAQQAEWEQQQHHGYNALSFLFPPPPHPSLNIGSRGPSFNLGLVEPNLNAAQITKWKTGRWNRGSPIDRLSQLSVRSSSNNDKNSKKKKKKSSGPKALTMKVSAPKANPFESIWSRRKFDVLGKKRKGEERRIGLARSLAIEKRKKTLLKEYQQSRKSTEFSDKRIGEWDEELGEFDKAILRSQRELKRKLNKSSKYNLSDGEEDDYFGTQNLGALPANDDFEDEIMPDDDDDAAAAETKKGAHRDAPYQQKGRLFEGEENKRKSKKEVMDEVIAKSKFFKAQKAKDKEENEQLVEELDKKFESLVQSEALLSLTGSGNSNALKALVQKSISNEHLKKDTLPAAGKNENFNQEKPDAFDRLVKEMAMEIRARPSDRTKTPEEIAQEERERLELLEEERQKRMLAPDNSSDEEDDDSENSSVGKQKYISGDDLGDSFTLDDERSHKKGWVDEILGRKDADGTKSEDDDSAEDSDSSQDDVDGDSDDESEEDDSTRGVKHSLKDWEQSDDDILDTNSEEDDEASKEEKEQDEDHPKEKVNHKGPKKAYKSTIAKSSKSDGISEDTKKLDRDTKRQSKPELPYIIDAPESFDQFLSLLADCSNSDIILIIGRIRASNAIQLTEKNLEKMQKFYGILLQYFAVSANKKPLNVELLNLLFKPLMEMSMEIPFYAATCARTRISHIHQQFCVQNKNPENSSWPSSKTLILLRLWSMIFPCSDYNHVVITPAILLMCEYLMRCPIVTGRDIAIGAFLCSLLLYVSRQSSKFCPEAINFLQTLLAAAVSGPSSSQNSQICHLVDLQALGQLLRIQNPTNEVTPLNFFLIMDLTEDSSVFSSDNFRAGLLSTVTETLDGFVNIYGHLKSFPEIFLPISTILHELAKQENMPVELQDKFRKVAKAIEAKTEEHYIGREPLRMRKQKAVPIKLLNPKFEENFVRGRDYDPDRERAERRKMQKLLKRETKGAARELRKDNHFLAEVKARDKALQEEEKAEKYKKARAFLEAQEHAFKSGQLGNGRKRRK 1179
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23240146 23257838 + ClCG08G010540.2 Cla08g01054 278709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01054 1179 Pfam K-box region 87 163 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cla08g01054 1179 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Cla08g01054 1179 Coils Coil 1142 1162 - -
Cla08g01054 1179 ProSiteProfiles K-box domain profile. 90 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cla08g01054 1179 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cla08g01054 1179 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cla08g01054 1179 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cla08g01054 1179 SUPERFAMILY SRF-like 2 84 IPR036879 GO:0003677|GO:0046983
Cla08g01054 1179 Coils Coil 127 147 - -
Cla08g01054 1179 MobiDBLite consensus disorder prediction 352 430 - -
Cla08g01054 1179 Coils Coil 546 566 - -
Cla08g01054 1179 MobiDBLite consensus disorder prediction 652 670 - -
Cla08g01054 1179 Coils Coil 443 470 - -
Cla08g01054 1179 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cla08g01054 1179 MobiDBLite consensus disorder prediction 514 569 - -
Cla08g01054 1179 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cla08g01054 1179 Pfam Nop14-like family 268 1164 IPR007276 GO:0032040
Cla08g01054 1179 MobiDBLite consensus disorder prediction 626 651 - -
Cla08g01054 1179 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Cla08g01054 1179 MobiDBLite consensus disorder prediction 671 687 - -
Cla08g01054 1179 MobiDBLite consensus disorder prediction 226 242 - -
Cla08g01054 1179 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cla08g01054 1179 MobiDBLite consensus disorder prediction 395 430 - -
Cla08g01054 1179 MobiDBLite consensus disorder prediction 597 625 - -
Cla08g01054 1179 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cla08g01054 1179 MobiDBLite consensus disorder prediction 226 263 - -
Cla08g01054 1179 MobiDBLite consensus disorder prediction 719 738 - -
Cla08g01054 1179 MobiDBLite consensus disorder prediction 502 739 - -
Cla08g01054 1179 PANTHER NOP14 245 1179 IPR007276 GO:0032040
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g01524 Cla-Chr7:32430415 Cla08g01054 Cla-Chr8:23240146 2.55E-58 dispersed
Cla08g01054 Cla-Chr8:23240146 Cla06g00195 Cla-Chr6:2321007 1.49E-46 dispersed
Cla08g01053 Cla-Chr8:23220342 Cla08g01054 Cla-Chr8:23240146 2.70E-48 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61567 PF04147 Nop14 2.40E-232 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01054 K14766 - csv:101219176 1503.42