Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01070 ATGTCCTCCGCCCATTCCCCTTCCTCCTCCTCCTCCTCCTCCTCCCCCACCGCCGCCGCCCCCGCCGGCGTTGGCCTCGGCTACGGCATTGCCATCGCCGTCAGCATCCTCGTCTTCATCTCCACCATCATGCTCATCTCCTACGCTTGCATTCGCGTCAAATCCGCCCGCCCTCGCCCTCGCCCTCGCCCTAGACCTGCCGCCTCTCTCCCTTCCCCCGCTGCCGACAATGTGGTGGTTCTCATGGTCGGATTAGACGGCTCCATCATCGAATCCTACCCTAAGTTAGTCCTTGGAGAGAGCCGCCGTCTTCCCGCCCCTAATCACGGCCCTTGCTCCATTTGCCTCTCCGATTACAAGCCTTACGATTCTCTCCGCTGTATTCCTGATTGTCGCCATTGTTTTCACTCCGACTGCGTCGATGAATGGCTTCGTATGAGCGCTACTTGTCCTTTGTGTCGAAATTCCCCTGCTCCAACCCCTGTTGCTACTCCTCTCTCTGAGTTTGTGCCTCTGGCTTCCAATGCCAGATATGGGAACTCTCTTGATTATCTCTTAGTGTTTAGTCTTATGTAA 576 56.77 MSSAHSPSSSSSSSSPTAAAPAGVGLGYGIAIAVSILVFISTIMLISYACIRVKSARPRPRPRPRPAASLPSPAADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYKPYDSLRCIPDCRHCFHSDCVDEWLRMSATCPLCRNSPAPTPVATPLSEFVPLASNARYGNSLDYLLVFSLM 191
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23395346 23396006 + ClCG08G010710.2 Cla08g01070 278725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01070 191 PANTHER RING-H2 FINGER PROTEIN ATL69-RELATED 26 159 - -
Cla08g01070 191 CDD RING-H2_PA-TM-RING 112 154 - -
Cla08g01070 191 ProSiteProfiles Zinc finger RING-type profile. 112 154 IPR001841 -
Cla08g01070 191 SUPERFAMILY RING/U-box 111 160 - -
Cla08g01070 191 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 26 159 - -
Cla08g01070 191 Pfam Ring finger domain 112 154 IPR001841 -
Cla08g01070 191 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 79 159 IPR013083 -
Cla08g01070 191 SMART ring_2 112 153 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00135 Cla-Chr5:1265972 Cla08g01070 Cla-Chr8:23395346 3.01E-32 dispersed
Cla05g00960 Cla-Chr5:9597153 Cla08g01070 Cla-Chr8:23395346 5.51E-27 dispersed
Cla07g01426 Cla-Chr7:31467728 Cla08g01070 Cla-Chr8:23395346 1.44E-28 dispersed
Cla08g01070 Cla-Chr8:23395346 Cla10g01731 Cla-Chr10:33126627 1.64E-37 dispersed
Cla08g01070 Cla-Chr8:23395346 Cla05g00098 Cla-Chr5:923329 2.11E-33 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01070 - - cmos:111462423 281.182