Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla08g01072 | ATGATGCCATTGGTGTATTTGTTTCACATTGTCTGTATGGAGTGGACCTATTTGAGTTGCACAGGAAGACGGTCAATCCACTCTTATCACATTTCTGATTTGGAACATGAATGCAAATATGTGGTTCCTCAACTTATAGTGGAAGAAATGGCCAAGGCCGAGATAGTTCAAGTGACCGCGAATTACATTTTCTATATAGAACAAAATGGATACAAAAAGATTGATAGGAAAGAAGGTGTCTCCCAAACTAAAGCTAAGGGGACTACCAGAAGGCCTCCTAATTTTTTAAGCTACAAATTCACTATCAACATTTTTGTTGCAGAGGATACTCCTTTTGTTTTAAGGGCTTCCATGGCTACTGAGGGCAGTCCCAGGACTGATATCTCAACAGATGGGGACACAGATGAAAAAAGCCGGAGGCCTGATAGAGGCCAACTTACTCTTACTATGGCTTCTGATTCTAGTGACAGATCCAAGGATAAAACTGATCAGAAGACTCTTCGCCGGCTAGCACAAAATCGTGAGGCTGCAAGGAAAAGCCGATTGAGAAAAAAAGCATACGTTCAACAGCTAGAGAGCAGTCGATTAAAATTGACACAACTTGAGCAGGAGCTTCAGCGAGCACGACAGCAGGGAATTTTCATATCAAGCTCAGGTGATCAGACCCATTCAATGAGTGGAAATGGGGCCATGGCATTTGATGTAGAATATGCTCGATGGCTTGAGGATCACAACCGTCAATTGAATGAATTGAGATCAGCTGTTAATTCTCATGCAAGTGACCCGGAACTGCGTATTGTTGTCGATGGCATCTTGGTTCATTATGATGAGCTCTTTAGGCTCAAGGGAAATGCAGCAAAGGCTGACGTTTTCCATTTATTATCAGGCATGTGGAAAACACCTGCAGAAAGATGTTTTCTTTGGCTCGGGGGTTTTCGTTCATCCGAGCTCCTAAAGCTTCTTGTAAATCAACTGGAGCCTCTAACAGAGCAGCAGTTGGTGGGAATAACAAACTTGCAGCAATCATCGCAGCAGGCAGAAGATGCATTATCACAAGGGATGGAGGCCTTGCAACAGTCCCTGGCAGAGACATTGTCGAGTGGAGCTCTCGGCTCCTCTGGTTCGTCAGGGAACGTTGCAAACTACATGGGTCAAATGGCCATGGCCATGGGTAAACTTGGGACCCTCGAGGGCTTTATACGCCAAGTAAGCCTTTCAACAATAGATATATTATATATGTATGTGTACTCCTTTTTACTTGTTTCCATTTTGGTAAGGTTTGAAACTTTGCTTCCTAGCTACTCCCCTTCCCTCCTATCCTTGAGTCGCTCCACTGCGTGCAGATTTATCGAAATGACTATTTTTGTTCTTCCTGCTCTGCATTATACTTGGGTTCTCAAATTCCAGGCTGACAACTTGCGACAACAGACACTTCAACAAATGCACCGTATATTGACAACTCGTCAGTCTGCTCGTGCTCTTCTTGCCATACATGACTACTTCTCCAGGCTACGAGCTCTTAGTTCGCTCTGGCTTGCTCGTCCGAGA | 1548 | 44.25 | MMPLVYLFHIVCMEWTYLSCTGRRSIHSYHISDLEHECKYVVPQLIVEEMAKAEIVQVTANYIFYIEQNGYKKIDRKEGVSQTKAKGTTRRPPNFLSYKFTINIFVAEDTPFVLRASMATEGSPRTDISTDGDTDEKSRRPDRGQLTLTMASDSSDRSKDKTDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQTHSMSGNGAMAFDVEYARWLEDHNRQLNELRSAVNSHASDPELRIVVDGILVHYDELFRLKGNAAKADVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLVNQLEPLTEQQLVGITNLQQSSQQAEDALSQGMEALQQSLAETLSSGALGSSGSSGNVANYMGQMAMAMGKLGTLEGFIRQVSLSTIDILYMYVYSFLLVSILVRFETLLPSYSPSLLSLSRSTACRFIEMTIFVLPALHYTWVLKFQADNLRQQTLQQMHRILTTRQSARALLAIHDYFSRLRALSSLWLARPR | 516 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 23407805 | 23412886 | - | ClCG08G010730.1 | Cla08g01072 | 278727 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla08g01072 | 516 | PANTHER | TRANSCRIPTION FACTOR TGA2.3-LIKE ISOFORM X1 | 468 | 516 | - | - | |
Cla08g01072 | 516 | SMART | brlzneu | 161 | 224 | IPR004827 | GO:0003700|GO:0006355 | |
Cla08g01072 | 516 | Pfam | bZIP transcription factor | 165 | 205 | IPR004827 | GO:0003700|GO:0006355 | |
Cla08g01072 | 516 | PANTHER | TRANSCRIPTION FACTOR TGA9 | 117 | 403 | - | - | |
Cla08g01072 | 516 | Gene3D | - | 164 | 216 | - | - | |
Cla08g01072 | 516 | PANTHER | TRANSCRIPTION FACTOR TGA2.3-LIKE ISOFORM X1 | 117 | 403 | - | - | |
Cla08g01072 | 516 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 168 | 183 | IPR004827 | GO:0003700|GO:0006355 | |
Cla08g01072 | 516 | CDD | bZIP_HBP1b-like | 165 | 217 | - | - | |
Cla08g01072 | 516 | PANTHER | TRANSCRIPTION FACTOR TGA9 | 468 | 516 | - | - | |
Cla08g01072 | 516 | MobiDBLite | consensus disorder prediction | 117 | 167 | - | - | |
Cla08g01072 | 516 | SUPERFAMILY | Leucine zipper domain | 165 | 208 | IPR046347 | GO:0003700|GO:0006355 | |
Cla08g01072 | 516 | MobiDBLite | consensus disorder prediction | 128 | 143 | - | - | |
Cla08g01072 | 516 | Coils | Coil | 184 | 211 | - | - | |
Cla08g01072 | 516 | Coils | Coil | 241 | 261 | - | - | |
Cla08g01072 | 516 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 163 | 207 | IPR004827 | GO:0003700|GO:0006355 | |
Cla08g01072 | 516 | ProSiteProfiles | DOG1 domain profile. | 230 | 514 | IPR025422 | GO:0006351|GO:0043565 | |
Cla08g01072 | 516 | Pfam | Seed dormancy control | 247 | 322 | IPR025422 | GO:0006351|GO:0043565 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cla08g01072 | Cla11g00770 | CCT | |
Cla08g01072 | Cla11g00770 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla05g02693 | Cla-Chr5:38147657 | Cla08g01072 | Cla-Chr8:23407805 | 2.44E-22 | dispersed | |
Cla08g00534 | Cla-Chr8:16299750 | Cla08g01072 | Cla-Chr8:23407805 | 2.12E-18 | dispersed | |
Cla08g01072 | Cla-Chr8:23407805 | Cla10g01552 | Cla-Chr10:30926557 | 4.66E-22 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
61569 | PF14144 | DOG1 | 2.10E-31 | No_clan | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla08g01072 | K14431 | - | csv:101213210 | 508.449 |