Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01072 ATGATGCCATTGGTGTATTTGTTTCACATTGTCTGTATGGAGTGGACCTATTTGAGTTGCACAGGAAGACGGTCAATCCACTCTTATCACATTTCTGATTTGGAACATGAATGCAAATATGTGGTTCCTCAACTTATAGTGGAAGAAATGGCCAAGGCCGAGATAGTTCAAGTGACCGCGAATTACATTTTCTATATAGAACAAAATGGATACAAAAAGATTGATAGGAAAGAAGGTGTCTCCCAAACTAAAGCTAAGGGGACTACCAGAAGGCCTCCTAATTTTTTAAGCTACAAATTCACTATCAACATTTTTGTTGCAGAGGATACTCCTTTTGTTTTAAGGGCTTCCATGGCTACTGAGGGCAGTCCCAGGACTGATATCTCAACAGATGGGGACACAGATGAAAAAAGCCGGAGGCCTGATAGAGGCCAACTTACTCTTACTATGGCTTCTGATTCTAGTGACAGATCCAAGGATAAAACTGATCAGAAGACTCTTCGCCGGCTAGCACAAAATCGTGAGGCTGCAAGGAAAAGCCGATTGAGAAAAAAAGCATACGTTCAACAGCTAGAGAGCAGTCGATTAAAATTGACACAACTTGAGCAGGAGCTTCAGCGAGCACGACAGCAGGGAATTTTCATATCAAGCTCAGGTGATCAGACCCATTCAATGAGTGGAAATGGGGCCATGGCATTTGATGTAGAATATGCTCGATGGCTTGAGGATCACAACCGTCAATTGAATGAATTGAGATCAGCTGTTAATTCTCATGCAAGTGACCCGGAACTGCGTATTGTTGTCGATGGCATCTTGGTTCATTATGATGAGCTCTTTAGGCTCAAGGGAAATGCAGCAAAGGCTGACGTTTTCCATTTATTATCAGGCATGTGGAAAACACCTGCAGAAAGATGTTTTCTTTGGCTCGGGGGTTTTCGTTCATCCGAGCTCCTAAAGCTTCTTGTAAATCAACTGGAGCCTCTAACAGAGCAGCAGTTGGTGGGAATAACAAACTTGCAGCAATCATCGCAGCAGGCAGAAGATGCATTATCACAAGGGATGGAGGCCTTGCAACAGTCCCTGGCAGAGACATTGTCGAGTGGAGCTCTCGGCTCCTCTGGTTCGTCAGGGAACGTTGCAAACTACATGGGTCAAATGGCCATGGCCATGGGTAAACTTGGGACCCTCGAGGGCTTTATACGCCAAGTAAGCCTTTCAACAATAGATATATTATATATGTATGTGTACTCCTTTTTACTTGTTTCCATTTTGGTAAGGTTTGAAACTTTGCTTCCTAGCTACTCCCCTTCCCTCCTATCCTTGAGTCGCTCCACTGCGTGCAGATTTATCGAAATGACTATTTTTGTTCTTCCTGCTCTGCATTATACTTGGGTTCTCAAATTCCAGGCTGACAACTTGCGACAACAGACACTTCAACAAATGCACCGTATATTGACAACTCGTCAGTCTGCTCGTGCTCTTCTTGCCATACATGACTACTTCTCCAGGCTACGAGCTCTTAGTTCGCTCTGGCTTGCTCGTCCGAGA 1548 44.25 MMPLVYLFHIVCMEWTYLSCTGRRSIHSYHISDLEHECKYVVPQLIVEEMAKAEIVQVTANYIFYIEQNGYKKIDRKEGVSQTKAKGTTRRPPNFLSYKFTINIFVAEDTPFVLRASMATEGSPRTDISTDGDTDEKSRRPDRGQLTLTMASDSSDRSKDKTDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQTHSMSGNGAMAFDVEYARWLEDHNRQLNELRSAVNSHASDPELRIVVDGILVHYDELFRLKGNAAKADVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLVNQLEPLTEQQLVGITNLQQSSQQAEDALSQGMEALQQSLAETLSSGALGSSGSSGNVANYMGQMAMAMGKLGTLEGFIRQVSLSTIDILYMYVYSFLLVSILVRFETLLPSYSPSLLSLSRSTACRFIEMTIFVLPALHYTWVLKFQADNLRQQTLQQMHRILTTRQSARALLAIHDYFSRLRALSSLWLARPR 516
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23407805 23412886 - ClCG08G010730.1 Cla08g01072 278727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01072 516 PANTHER TRANSCRIPTION FACTOR TGA2.3-LIKE ISOFORM X1 468 516 - -
Cla08g01072 516 SMART brlzneu 161 224 IPR004827 GO:0003700|GO:0006355
Cla08g01072 516 Pfam bZIP transcription factor 165 205 IPR004827 GO:0003700|GO:0006355
Cla08g01072 516 PANTHER TRANSCRIPTION FACTOR TGA9 117 403 - -
Cla08g01072 516 Gene3D - 164 216 - -
Cla08g01072 516 PANTHER TRANSCRIPTION FACTOR TGA2.3-LIKE ISOFORM X1 117 403 - -
Cla08g01072 516 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 168 183 IPR004827 GO:0003700|GO:0006355
Cla08g01072 516 CDD bZIP_HBP1b-like 165 217 - -
Cla08g01072 516 PANTHER TRANSCRIPTION FACTOR TGA9 468 516 - -
Cla08g01072 516 MobiDBLite consensus disorder prediction 117 167 - -
Cla08g01072 516 SUPERFAMILY Leucine zipper domain 165 208 IPR046347 GO:0003700|GO:0006355
Cla08g01072 516 MobiDBLite consensus disorder prediction 128 143 - -
Cla08g01072 516 Coils Coil 184 211 - -
Cla08g01072 516 Coils Coil 241 261 - -
Cla08g01072 516 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 163 207 IPR004827 GO:0003700|GO:0006355
Cla08g01072 516 ProSiteProfiles DOG1 domain profile. 230 514 IPR025422 GO:0006351|GO:0043565
Cla08g01072 516 Pfam Seed dormancy control 247 322 IPR025422 GO:0006351|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla08g01072 Cla11g00770 CCT
Cla08g01072 Cla11g00770 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02693 Cla-Chr5:38147657 Cla08g01072 Cla-Chr8:23407805 2.44E-22 dispersed
Cla08g00534 Cla-Chr8:16299750 Cla08g01072 Cla-Chr8:23407805 2.12E-18 dispersed
Cla08g01072 Cla-Chr8:23407805 Cla10g01552 Cla-Chr10:30926557 4.66E-22 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61569 PF14144 DOG1 2.10E-31 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01072 K14431 - csv:101213210 508.449