Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01081 ATGAGCAGTTTGAGGACGGTGTGCAGGCCTCATGCCATGTTTTCTTCCTTCCTCTTTAGCAGCAGATGCCAATCTATGCCCAGTGTTTCGTTTCGGAACCCTAATAACAAGCGTCGCTTTTCACTTTTCTCTCCCACCTTCAATTCCTCCTCAGGCTTTTCTCGAACCGAGAAGTGGTTCCGTATCAATCAGAGGAAGACGCTGGTCATGGCTTCCAATTGGGCTAACGAAAAATCTCCCTATGAAACTCTCGAGTTAGAGAGGGATGCTGATGAAGAACAGATAAAGAGTTCCTATAGGCGCTTGGCCAAATTTTATCATCCGGATGGTTTGCTCCTTGCTCAACTTACTTATGTAACTGTGAACTGGGTTCTTTCTTTTTTCAAAGTTTATGATGGTAGAGGAACTCTTGAAGAAGGAGAAACAGCTGAAGCTAGATTCATCAAGATTCAAGCTGCTTATGAGTTGCTCATAGATGATGAGAAGCGGAGGCAGTATGATGTAGATAACCGAGTTAATCCAATGAAGGCATCTCAAGCATGGATGGAGTGGCTTATCAAAAAGCGCAAAGCTTTTGATCAACGGGGTGACATGGCAATAGTAGCTTGGGCTGAACAACAGCAGCGTGAGATGAATCTACGGGCTCGGCGCCTTTCTCGATCAAAGGTTGATCCAGACGAAGAGAAAAGATTACTGGCAAAAGAAAAGAAGGCGTCAATAGAGTATTTTAACAGCACACTAAAGCGCCACACACTTATCTTGAAGAAGAGGGATTTAATGCGAAAAAAAGCAGAGGAGGAAAAGAAGAAGGTAATAAGGCAACTCTTAGCTGAGGAGGGCCTCGAGCTTGATACAGACGACGACGACAACCTGTAG 876 44.52 MSSLRTVCRPHAMFSSFLFSSRCQSMPSVSFRNPNNKRRFSLFSPTFNSSSGFSRTEKWFRINQRKTLVMASNWANEKSPYETLELERDADEEQIKSSYRRLAKFYHPDGLLLAQLTYVTVNWVLSFFKVYDGRGTLEEGETAEARFIKIQAAYELLIDDEKRRQYDVDNRVNPMKASQAWMEWLIKKRKAFDQRGDMAIVAWAEQQQREMNLRARRLSRSKVDPDEEKRLLAKEKKASIEYFNSTLKRHTLILKKRDLMRKKAEEEKKKVIRQLLAEEGLELDTDDDDNL 291
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23574088 23576539 + ClCG08G010830.1 Cla08g01081 278736

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01081 291 PANTHER LD30543P 45 289 - -
Cla08g01081 291 SMART dnaj_3 78 162 IPR001623 -
Cla08g01081 291 Gene3D DnaJ domain 68 185 IPR036869 -
Cla08g01081 291 PANTHER CO-CHAPERONE PROTEIN DJLA 45 289 - -
Cla08g01081 291 SUPERFAMILY Chaperone J-domain 69 168 IPR036869 -
Cla08g01081 291 Coils Coil 261 281 - -
Cla08g01081 291 Pfam DnaJ domain 80 109 IPR001623 -
Cla08g01081 291 ProSiteProfiles dnaJ domain profile. 79 170 IPR001623 -
Cla08g01081 291 CDD DnaJ 80 159 IPR001623 -
Cla08g01081 291 ProSitePatterns Nt-dnaJ domain signature. 147 166 IPR018253 -
Cla08g01081 291 PRINTS DnaJ domain signature 81 99 IPR001623 -
Cla08g01081 291 PRINTS DnaJ domain signature 99 114 IPR001623 -
Cla08g01081 291 PRINTS DnaJ domain signature 142 162 IPR001623 -
Cla08g01081 291 PRINTS DnaJ domain signature 188 207 IPR001623 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01081 - - - csv:101214898 449.129
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g00274 Cla-Chr8:5842402 Cla08g01081 Cla-Chr8:23574088 0 dispersed
Cla08g01081 Cla-Chr8:23574088 Cla07g01159 Cla-Chr7:28540031 8.69E-08 dispersed
Cla08g01081 Cla-Chr8:23574088 Cla01g00569 Cla-Chr1:6398937 1.41E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g345 . . . . Bpe02g00088 . . Bma01g02630 . . . . . . Sed04g0058 . . Bhi04g00721 Tan02g2350 Cmetu03g2083 . . . . Cla08g01081 Cam08g1532 Cec08g1108 Cco08g1235 Clacu08g1237 . Cre08g1018 . . . . . . . Cme03g01491 . . Bda11g00754 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g00937 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005322 1 1 0 1 1 3 1 3 1 1 2 3 1 1 1 1 3 2 1 1 1 1 1 1 1 1 1 1 2 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla08g01081 Cla_Chr08 FPKM 4.928937 5.93445 4.486322 6.53405 9.100677 6.844865 8.228908 13.452487 12.336802 8.976258