Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01087 ATGGCAGCTTTTGCTCTCTCAAATTACACTCTCTTTTCTCCTCGCCCTTCTACTCCACACGTTTCTTCTTCCTCTAAAACCCTAGAATGCACATCCCTTATTCACCAACCAGTTTGTCTTCTTCATAATCCTCGCCATCGCTATCGTCTTTGTAACTCATTAATAAGTTTTTCTCCAGTTACTCGTTCTGTTGCATCCTGTTTTTCTGCTCCTGATTCTGTCGCCAATGTAAATAAAGAAGAGGATGAGGGAAAAGCTATGGAAAAGGATGGATATCAGTTTGATGGATCTAGCTTGCAGACCCTCATCGAGGTATACCGAGAAGCTTTTCTCGATGGAGATCAGAAGACTGTTTCTGAAGTCGAGGAAAGACTAAAAATAATTGGGAGGGAGAAAGATGGGTTGTCCCAGAAAGTGTCAAATATATCGGCGGAGATAACGTCTGGAAAAGAGAAATATATACGCTTACAAGCTGATTTTGATAATTTTAGGAAAAGATCAGAAAAAGAAAGACATACTGTGAAGAATAATGCTCAAAAGGAGGTTATTGAGAGCCTATTGCCAATGATTGACAGTTTTGAGAAAGCCAGGCAAAAAATTGTTCCTCAAACTGACAAGGAGAAGAAGATTGACGTAAGCTACCAGGGTATATACAAGCAATTTGTCGAGACATTGAGGAGCTGGCGTGTCTCAGCCGTTGCCACAGTAGGAAGGCCATTTGATCCCTCATTACATGAAGCTGTAGCACGAGAGGAGTCACCGGAGATCAAGGAAGGGATCGTTATTCAAGAATTACGACGGGGGTTTATGCTTGGTGAACGGGTTCTAAGACCAGCAAGAGTAAAAGTTTCAAAAGGTCCAGGTAGGAAGAATTCCCCGACAATCGATGCAGGGCAACAACCAGCAGCTGCTGTGGAGTAG 921 42.67 MAAFALSNYTLFSPRPSTPHVSSSSKTLECTSLIHQPVCLLHNPRHRYRLCNSLISFSPVTRSVASCFSAPDSVANVNKEEDEGKAMEKDGYQFDGSSLQTLIEVYREAFLDGDQKTVSEVEERLKIIGREKDGLSQKVSNISAEITSGKEKYIRLQADFDNFRKRSEKERHTVKNNAQKEVIESLLPMIDSFEKARQKIVPQTDKEKKIDVSYQGIYKQFVETLRSWRVSAVATVGRPFDPSLHEAVAREESPEIKEGIVIQELRRGFMLGERVLRPARVKVSKGPGRKNSPTIDAGQQPAAAVE 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23625256 23627268 - ClCG08G010900.1 Cla08g01087 278742

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01087 306 PANTHER GRPE PROTEIN HOMOLOG 1 295 - -
Cla08g01087 306 SUPERFAMILY Head domain of nucleotide exchange factor GrpE 232 287 IPR009012 GO:0006457
Cla08g01087 306 SUPERFAMILY Coiled-coil domain of nucleotide exchange factor GrpE 134 227 IPR013805 -
Cla08g01087 306 Gene3D - 113 226 IPR013805 -
Cla08g01087 306 Pfam GrpE 130 285 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Cla08g01087 306 ProSitePatterns grpE protein signature. 240 283 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Cla08g01087 306 MobiDBLite consensus disorder prediction 281 306 - -
Cla08g01087 306 PRINTS GrpE protein signature 154 170 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Cla08g01087 306 PRINTS GrpE protein signature 237 252 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Cla08g01087 306 PRINTS GrpE protein signature 182 197 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Cla08g01087 306 PRINTS GrpE protein signature 264 283 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Cla08g01087 306 CDD GrpE 150 283 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Cla08g01087 306 Hamap Protein GrpE [grpE]. 78 285 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Cla08g01087 306 Gene3D Head domain of nucleotide exchange factor GrpE 230 285 IPR009012 GO:0006457
Cla08g01087 306 PANTHER GRPE PROTEIN 1 295 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01087 K03687 GRPE; molecular chaperone GrpE - csv:101215875 501.13
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g00615 Cla-Chr4:20353016 Cla08g01087 Cla-Chr8:23625256 7.30E-61 dispersed
Cla08g01087 Cla-Chr8:23625256 Cla10g00480 Cla-Chr10:6305701 1.38E-10 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g338 . . . . . . . . . . . . . Car12g00130 Sed04g0119 . Cpe07g00118 Bhi04g00711 Tan02g2357 Cmetu03g1212 . Hepe10g0529 . . Cla08g01087 Cam08g1539 Cec08g1113 Cco08g1240 Clacu08g1242 . Cre08g1023 . . . . . Csa04g01882 . Cme03g01499 . . . . . . . Bma02g00258 . . . Cma12g00139 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012843 1 1 1 2 0 1 1 1 1 1 1 1 1 1 1 0 1 2 0 1 1 1 1 1 1 0 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla08g01087 Cla_Chr08 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0