Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla08g01089 | ATGTCAATCCCATCGGCTTCTTCGTCACCGCGAAAACAAGAGCCAAAGCTTTCAGGATCAGAAGTTGGCCATTTGGTCTGCTGTTCTGTAGTTCAAAGTGGAGGGCGTTACAATATTGGTGCCTCAAACCGTGATGATGCCTTCTATAGGTATAAGATGCCTAAGATGGTTACTAAAATTGAAGGTAGAGGTAATGGCATCAAGACTAATGTAGTTAACATGGTGGAAATTGCAAAAGCCTTGGGCAGACCTGCCTCTTACACTACCAAGTACTTTGGATGTGAGCTTGGTGCGCAATCCAAGTTCGATGAGAAAACCGGGACGTCTCTTGTAAATGGTGCTCATGAGACAGCAAAGCTGGCTGGTCTTCTTGAAAATTTCATAAAAAAATATGTTCAATGCTATGGATGTGGAAACCCTGAGACTGAGATAATCATCACAAAGACGCAGATGATCACTATGAAATGTGCTGCCTGTGGATTCATATCTGATGTTGACATGAGAGATAAACTCACAACGTTTATTCTCAAGAATCCTCCTGAACAGAAGAAGGGATCAAAAGACAAGAAAGCAATGAGGAGGGCTGAGAAGGAACGACTTAAGGAGGGAGAGGTTGCTGATGAGGAGCAGAAGAAAATAAAGAAGGATTCGCTAAAGAAGAAAAGCACTAGTACTACAAAGGATGCTGTAACCAAGGTTCCAAGCAAGAAAAAGAATAATGGTTCAGATGAGGATCATTCTCCAACTCGCAGTCATGCCGGTGATAATGACCAAGCAGATGATGACGATGATGACGATGATGTTCAGTGGCAAACAGACACTTCTCTAGAGGCAGCCAAACAGCGTATCCAGGAGCAGCTGAGTGCTGTCACTGCTGATATGGTCATGCTCTCTACTACCGAAGAGAATAAGTCGTCAAAGAAGTCCCCTGAGCACGAGAAGTCTGCAGTCAATGGAACCAAGAATGGAAATGGAGTTTCTACCCATGGTGCCCTCGTTCAAGAGATCAAAGATTATTTGAAGAAAGGTTCCTCTGCAGCCGATCTCAAATCATTCTTGGAATCACTTTCTGGAACTCGCCAAGAGATTGTGAATGCCTTAGTCGAGTCTCTGTTCGATGGTGTTGGGAAAGGCTTCTCAAAGGAGGTAGTGAAAAAGAAGAAGTTCCTAGCTGCAGCTGCCGCTCAGGAGGGATCACAGATAGTTCTTTTACGCGCCATTGAATCTTTCTGTCTGAACACAAGTCCAGAGGCGGGTAAGGAGGTCGCTCTAGTCCTGAAATCGTTATATGACGGTGATGTAATAGAGGAGGAATTCGTACTAGAGTGGTACCAGCAGGGTGTTGCTGGTGCTAACAAAAGCTCTCAAATCTGGAAGTATGTAAAGCCCTTCATCGAATGGCTCCAGAATGCTGAGTCGGAGACGGAAGAAGAATAA | 1437 | 44.47 | MSIPSASSSPRKQEPKLSGSEVGHLVCCSVVQSGGRYNIGASNRDDAFYRYKMPKMVTKIEGRGNGIKTNVVNMVEIAKALGRPASYTTKYFGCELGAQSKFDEKTGTSLVNGAHETAKLAGLLENFIKKYVQCYGCGNPETEIIITKTQMITMKCAACGFISDVDMRDKLTTFILKNPPEQKKGSKDKKAMRRAEKERLKEGEVADEEQKKIKKDSLKKKSTSTTKDAVTKVPSKKKNNGSDEDHSPTRSHAGDNDQADDDDDDDDVQWQTDTSLEAAKQRIQEQLSAVTADMVMLSTTEENKSSKKSPEHEKSAVNGTKNGNGVSTHGALVQEIKDYLKKGSSAADLKSFLESLSGTRQEIVNALVESLFDGVGKGFSKEVVKKKKFLAAAAAQEGSQIVLLRAIESFCLNTSPEAGKEVALVLKSLYDGDVIEEEFVLEWYQQGVAGANKSSQIWKYVKPFIEWLQNAESETEEE | 478 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 23641067 | 23644047 | - | ClCG08G010920.2 | Cla08g01089 | 278744 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla08g01089 | 478 | Gene3D | - | 138 | 178 | - | - | |
Cla08g01089 | 478 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 5-1-RELATED | 38 | 478 | - | - | |
Cla08g01089 | 478 | Gene3D | - | 326 | 469 | - | - | |
Cla08g01089 | 478 | SUPERFAMILY | ARM repeat | 331 | 472 | IPR016024 | - | |
Cla08g01089 | 478 | Coils | Coil | 468 | 478 | - | - | |
Cla08g01089 | 478 | MobiDBLite | consensus disorder prediction | 300 | 327 | - | - | |
Cla08g01089 | 478 | SMART | eIF2Bneu4 | 48 | 162 | IPR002735 | GO:0003743|GO:0006413 | |
Cla08g01089 | 478 | ProSiteProfiles | W2 domain profile. | 307 | 478 | IPR003307 | GO:0005515 | |
Cla08g01089 | 478 | MobiDBLite | consensus disorder prediction | 176 | 269 | - | - | |
Cla08g01089 | 478 | CDD | W2_eIF5 | 327 | 476 | - | - | |
Cla08g01089 | 478 | SMART | 542_3 | 387 | 474 | IPR003307 | GO:0005515 | |
Cla08g01089 | 478 | Pfam | Domain found in IF2B/IF5 | 44 | 160 | IPR002735 | GO:0003743|GO:0006413 | |
Cla08g01089 | 478 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR | 38 | 478 | IPR045196 | GO:0003743|GO:0006413 | |
Cla08g01089 | 478 | SUPERFAMILY | Translation initiation factor 2 beta, aIF2beta, N-terminal domain | 42 | 134 | IPR016189 | GO:0003743|GO:0006413 | |
Cla08g01089 | 478 | Gene3D | - | 29 | 137 | - | - | |
Cla08g01089 | 478 | MobiDBLite | consensus disorder prediction | 181 | 257 | - | - | |
Cla08g01089 | 478 | Pfam | eIF4-gamma/eIF5/eIF2-epsilon | 400 | 478 | IPR003307 | GO:0005515 | |
Cla08g01089 | 478 | SUPERFAMILY | Zinc-binding domain of translation initiation factor 2 beta | 131 | 166 | IPR016190 | GO:0003743|GO:0006413 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla03g00004 | Cla-Chr3:96912 | Cla08g01089 | Cla-Chr8:23641067 | 3.51E-06 | dispersed | |
Cla11g00941 | Cla-Chr11:16496514 | Cla08g01089 | Cla-Chr8:23641067 | 8.40E-06 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla08g01089 | K03262 | - | csv:101210873 | 734.947 |