Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01089 ATGTCAATCCCATCGGCTTCTTCGTCACCGCGAAAACAAGAGCCAAAGCTTTCAGGATCAGAAGTTGGCCATTTGGTCTGCTGTTCTGTAGTTCAAAGTGGAGGGCGTTACAATATTGGTGCCTCAAACCGTGATGATGCCTTCTATAGGTATAAGATGCCTAAGATGGTTACTAAAATTGAAGGTAGAGGTAATGGCATCAAGACTAATGTAGTTAACATGGTGGAAATTGCAAAAGCCTTGGGCAGACCTGCCTCTTACACTACCAAGTACTTTGGATGTGAGCTTGGTGCGCAATCCAAGTTCGATGAGAAAACCGGGACGTCTCTTGTAAATGGTGCTCATGAGACAGCAAAGCTGGCTGGTCTTCTTGAAAATTTCATAAAAAAATATGTTCAATGCTATGGATGTGGAAACCCTGAGACTGAGATAATCATCACAAAGACGCAGATGATCACTATGAAATGTGCTGCCTGTGGATTCATATCTGATGTTGACATGAGAGATAAACTCACAACGTTTATTCTCAAGAATCCTCCTGAACAGAAGAAGGGATCAAAAGACAAGAAAGCAATGAGGAGGGCTGAGAAGGAACGACTTAAGGAGGGAGAGGTTGCTGATGAGGAGCAGAAGAAAATAAAGAAGGATTCGCTAAAGAAGAAAAGCACTAGTACTACAAAGGATGCTGTAACCAAGGTTCCAAGCAAGAAAAAGAATAATGGTTCAGATGAGGATCATTCTCCAACTCGCAGTCATGCCGGTGATAATGACCAAGCAGATGATGACGATGATGACGATGATGTTCAGTGGCAAACAGACACTTCTCTAGAGGCAGCCAAACAGCGTATCCAGGAGCAGCTGAGTGCTGTCACTGCTGATATGGTCATGCTCTCTACTACCGAAGAGAATAAGTCGTCAAAGAAGTCCCCTGAGCACGAGAAGTCTGCAGTCAATGGAACCAAGAATGGAAATGGAGTTTCTACCCATGGTGCCCTCGTTCAAGAGATCAAAGATTATTTGAAGAAAGGTTCCTCTGCAGCCGATCTCAAATCATTCTTGGAATCACTTTCTGGAACTCGCCAAGAGATTGTGAATGCCTTAGTCGAGTCTCTGTTCGATGGTGTTGGGAAAGGCTTCTCAAAGGAGGTAGTGAAAAAGAAGAAGTTCCTAGCTGCAGCTGCCGCTCAGGAGGGATCACAGATAGTTCTTTTACGCGCCATTGAATCTTTCTGTCTGAACACAAGTCCAGAGGCGGGTAAGGAGGTCGCTCTAGTCCTGAAATCGTTATATGACGGTGATGTAATAGAGGAGGAATTCGTACTAGAGTGGTACCAGCAGGGTGTTGCTGGTGCTAACAAAAGCTCTCAAATCTGGAAGTATGTAAAGCCCTTCATCGAATGGCTCCAGAATGCTGAGTCGGAGACGGAAGAAGAATAA 1437 44.47 MSIPSASSSPRKQEPKLSGSEVGHLVCCSVVQSGGRYNIGASNRDDAFYRYKMPKMVTKIEGRGNGIKTNVVNMVEIAKALGRPASYTTKYFGCELGAQSKFDEKTGTSLVNGAHETAKLAGLLENFIKKYVQCYGCGNPETEIIITKTQMITMKCAACGFISDVDMRDKLTTFILKNPPEQKKGSKDKKAMRRAEKERLKEGEVADEEQKKIKKDSLKKKSTSTTKDAVTKVPSKKKNNGSDEDHSPTRSHAGDNDQADDDDDDDDVQWQTDTSLEAAKQRIQEQLSAVTADMVMLSTTEENKSSKKSPEHEKSAVNGTKNGNGVSTHGALVQEIKDYLKKGSSAADLKSFLESLSGTRQEIVNALVESLFDGVGKGFSKEVVKKKKFLAAAAAQEGSQIVLLRAIESFCLNTSPEAGKEVALVLKSLYDGDVIEEEFVLEWYQQGVAGANKSSQIWKYVKPFIEWLQNAESETEEE 478
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23641067 23644047 - ClCG08G010920.2 Cla08g01089 278744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01089 478 Gene3D - 138 178 - -
Cla08g01089 478 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 5-1-RELATED 38 478 - -
Cla08g01089 478 Gene3D - 326 469 - -
Cla08g01089 478 SUPERFAMILY ARM repeat 331 472 IPR016024 -
Cla08g01089 478 Coils Coil 468 478 - -
Cla08g01089 478 MobiDBLite consensus disorder prediction 300 327 - -
Cla08g01089 478 SMART eIF2Bneu4 48 162 IPR002735 GO:0003743|GO:0006413
Cla08g01089 478 ProSiteProfiles W2 domain profile. 307 478 IPR003307 GO:0005515
Cla08g01089 478 MobiDBLite consensus disorder prediction 176 269 - -
Cla08g01089 478 CDD W2_eIF5 327 476 - -
Cla08g01089 478 SMART 542_3 387 474 IPR003307 GO:0005515
Cla08g01089 478 Pfam Domain found in IF2B/IF5 44 160 IPR002735 GO:0003743|GO:0006413
Cla08g01089 478 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 38 478 IPR045196 GO:0003743|GO:0006413
Cla08g01089 478 SUPERFAMILY Translation initiation factor 2 beta, aIF2beta, N-terminal domain 42 134 IPR016189 GO:0003743|GO:0006413
Cla08g01089 478 Gene3D - 29 137 - -
Cla08g01089 478 MobiDBLite consensus disorder prediction 181 257 - -
Cla08g01089 478 Pfam eIF4-gamma/eIF5/eIF2-epsilon 400 478 IPR003307 GO:0005515
Cla08g01089 478 SUPERFAMILY Zinc-binding domain of translation initiation factor 2 beta 131 166 IPR016190 GO:0003743|GO:0006413
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00004 Cla-Chr3:96912 Cla08g01089 Cla-Chr8:23641067 3.51E-06 dispersed
Cla11g00941 Cla-Chr11:16496514 Cla08g01089 Cla-Chr8:23641067 8.40E-06 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01089 K03262 - csv:101210873 734.947