Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01092 ATGCCAGCTGGCCCACACTCCAAAACCCGTGTTCTTTCCTCTACTACATCACCTCTCCCCGTTTCCATGCTTTTCCCTCGCTTGCAACTGATTAAGCCTTTCGCTTTACTCTTTATATTATCAAAAATCCTTGCTGCTCATTTTCCCTTCATCACTTTTCTTCTTCCATTTCCAAATCTTCGACCCGAAGAAGAGAAATTCATGGCTCGATTTGTGATTCTCTTTGCTCTCTTTGTTCTTCCTTCACTCGCCGCCGCAAGCCGCCCCGTCAGAACTCCGTTCATTGTTCGTGGTAAAGTCTTCTGCGACACTTGCCTTGCCGGCTTTGAAACCTCCGCCACTACCTACATTCCCGGTGCTAAGGTCAAAATTGAATGCAAGGACAGGAACTCAATGGAACTTCTATATTCTCACGAGGCCACAACAGACTCCACTGGTTCTTATACGCTCTTAATCAACGAGGACCATGGGGATGAACTTTGTGATGCTGTACTAATCAGCAGCCCTGAGAAGAGCTGTTCATCAGTATCCGAAGGCCGTGACCGTGCCCGTGTGATCCTCACCCGCTACAATGGTATTGCCTCAAACGAACGCTATGTCAATGCCATGGGTTTTGCAAGAGATGAACCTATGTCTGGCTGCAACCAAGTCCTGAGTCAGTACCAGGATATTGAAGATTAG 681 47.43 MPAGPHSKTRVLSSTTSPLPVSMLFPRLQLIKPFALLFILSKILAAHFPFITFLLPFPNLRPEEEKFMARFVILFALFVLPSLAAASRPVRTPFIVRGKVFCDTCLAGFETSATTYIPGAKVKIECKDRNSMELLYSHEATTDSTGSYTLLINEDHGDELCDAVLISSPEKSCSSVSEGRDRARVILTRYNGIASNERYVNAMGFARDEPMSGCNQVLSQYQDIED 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23665453 23667803 + ClCG08G010950.2 Cla08g01092 278747

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01092 226 PANTHER PROTEIN DOWNSTREAM OF FLC-RELATED 68 225 IPR006041 -
Cla08g01092 226 PANTHER ALLERGEN-LIKE PROTEIN BRSN20 68 225 - -
Cla08g01092 226 Pfam Pollen protein Ole e 1 like 96 179 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01092 - - - csv:101211620 293.893
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g02317 Cla-Chr1:36969419 Cla08g01092 Cla-Chr8:23665453 1.31E-21 dispersed
Cla07g00915 Cla-Chr7:25210887 Cla08g01092 Cla-Chr8:23665453 7.11E-43 dispersed
Cla07g01526 Cla-Chr7:32462314 Cla08g01092 Cla-Chr8:23665453 9.01E-11 dispersed
Cla08g01092 Cla-Chr8:23665453 Cla03g00725 Cla-Chr3:8849803 2.91E-24 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g379 . Blo12g00697 . Bda03g00502 Bpe02g00095 Bpe04g00457 . . Cmo05g00507 Cmo12g00113 . . . Car12g00133 Sed04g0127 . Cpe07g00120 Bhi04g00736 Tan02g2367 Cmetu03g1991 . Hepe10g0520 . Lcy13g1582 Cla08g01092 Cam08g1545 Cec08g1119 Cco08g1246 Clacu08g1247 . Cre08g1029 . . Cone17ag1234 Cone20ag0491 . . . Cme03g01505 . Blo18g00213 . Bda01g01393 Bpe02g01607 . . . . . . Cma12g00143 Cma05g00485 Car05g00432 . Cpe11g00424 . . . . . . . . . . . . . . . Lsi08g00948 . Chy03g01015 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005917 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 0 1 1 1 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla08g01092 Cla_Chr08 FPKM 66.151909 69.885292 83.537834 86.418678 82.186272 63.344074 88.605278 86.051559 85.860756 104.685669