Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01096 ATGGCTGCTTTGATGGATTTGTATGGTTGCAGAGAGTTTCAGTCAGATCCATATGGTGGTGAATTAATGGAAGCACTTGAACCTTTTATGAAAGCTGCTTCCTCTTCTTATTTTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTTTCCGGATTTCTCTTTCTCTTCTTCCGTCCAAACAGAGTCCACTTCTTACCCTTCTGATTGCTCTCCTCCGATGACCCATTTATTTTCCGGTGGGTTTTCGGGTCAAGATTTCCATGGCGTAGAGCAATCAGCTTCTATTGGACTCAATTACTTGACCCCTTTTCAGATCCAACAGATCCAATCTCAATTCGGTCTCCAGACACAAATCCAACCAGTTTGGGGACAGATCAACAACCAAGTAGCGAGAAATCAGAGCAACAGCGCTGGAAATTTGCTTGGACCGAAGGGGATTCCGATGAAACACGTCGGATCTCCACCGAAATCCACGAAGCTTTATCGAGGCGTGAGGCAAAGGCATTGGGGAAAATGGGTGGCGGAGATCCGTCTACCGAGGAACAGAACTCGGCTATGGCTCGGCACCTTCGACACCGCAGAAGAAGCCGCTTTAGCCTATGACAAAGCCGCTTACAAGCTCCGAGGCGACTTCGCCAGACTCAATTTCCCTCACCTCAAGCACCACGGCTCCTCCGTAGGCGGCGATTTCGGCGAGTACAAGCCATTACACTCAGCCGTCGACGCCAAGCTCGAAGCCATCTGCCAAACCTTGGCAGAGTCGCAGAAACAGGGGAAATCGGATCGAAGGAAATCGAAATCATCGGGCTCTTCTACCGTCGGATCGGAGTCTCAGACGCCGACGGTGACTGATTCCGACGACGATCTGAAGACGGCGGATGTCAGATCAAGCGGATCGGAGATCTGTTGCAAGGCGGAGAACTCCTCGTCGCCGGTTTCGGCCGAGAGTGATGAGTCGGCAGGGTCTTCGCCTTTATCGGATCTGACGTTCCCGGATCTGACGGAATCGCCCTGGGAACAATCTACAGAAAGCTGTTTGGATTCTCCGACTAAGTTTTTGCAGTTGGCAGAATCAGTTGTATGTGATTTGTAG 1104 50.18 MAALMDLYGCREFQSDPYGGELMEALEPFMKAASSSYFPSSSSSSSSSSSSSFPDFSFSSSVQTESTSYPSDCSPPMTHLFSGGFSGQDFHGVEQSASIGLNYLTPFQIQQIQSQFGLQTQIQPVWGQINNQVARNQSNSAGNLLGPKGIPMKHVGSPPKSTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPHLKHHGSSVGGDFGEYKPLHSAVDAKLEAICQTLAESQKQGKSDRRKSKSSGSSTVGSESQTPTVTDSDDDLKTADVRSSGSEICCKAENSSSPVSAESDESAGSSPLSDLTFPDLTESPWEQSTESCLDSPTKFLQLAESVVCDL 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23739748 23740956 + ClCG08G010990.2 Cla08g01096 278751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01096 367 PRINTS Ethylene responsive element binding protein signature 187 203 IPR001471 GO:0003700|GO:0006355
Cla08g01096 367 PRINTS Ethylene responsive element binding protein signature 165 176 IPR001471 GO:0003700|GO:0006355
Cla08g01096 367 ProSiteProfiles AP2/ERF domain profile. 164 221 IPR001471 GO:0003700|GO:0006355
Cla08g01096 367 SUPERFAMILY DNA-binding domain 164 222 IPR016177 GO:0003677
Cla08g01096 367 MobiDBLite consensus disorder prediction 305 349 - -
Cla08g01096 367 SMART rav1_2 164 227 IPR001471 GO:0003700|GO:0006355
Cla08g01096 367 MobiDBLite consensus disorder prediction 257 349 - -
Cla08g01096 367 CDD AP2 163 223 IPR001471 GO:0003700|GO:0006355
Cla08g01096 367 Gene3D AP2/ERF domain 164 222 IPR036955 GO:0003700|GO:0006355
Cla08g01096 367 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 4 347 - -
Cla08g01096 367 MobiDBLite consensus disorder prediction 271 289 - -
Cla08g01096 367 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-4 4 347 - -
Cla08g01096 367 Pfam AP2 domain 165 213 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g01421 Cla-Chr7:31387827 Cla08g01096 Cla-Chr8:23739748 1.60E-39 dispersed
Cla08g01096 Cla-Chr8:23739748 Cla10g01632 Cla-Chr10:31971690 3.63E-24 dispersed
Cla11g01505 Cla-Chr11:28727353 Cla08g01096 Cla-Chr8:23739748 5.04E-100 transposed
Cla01g01849 Cla-Chr1:33368831 Cla08g01096 Cla-Chr8:23739748 5.34E-90 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61571 PF00847 AP2 4.90E-15 CL0081 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01096 K09286 - csv:101222833 546.969