Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla08g01096 | ATGGCTGCTTTGATGGATTTGTATGGTTGCAGAGAGTTTCAGTCAGATCCATATGGTGGTGAATTAATGGAAGCACTTGAACCTTTTATGAAAGCTGCTTCCTCTTCTTATTTTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTTTCCGGATTTCTCTTTCTCTTCTTCCGTCCAAACAGAGTCCACTTCTTACCCTTCTGATTGCTCTCCTCCGATGACCCATTTATTTTCCGGTGGGTTTTCGGGTCAAGATTTCCATGGCGTAGAGCAATCAGCTTCTATTGGACTCAATTACTTGACCCCTTTTCAGATCCAACAGATCCAATCTCAATTCGGTCTCCAGACACAAATCCAACCAGTTTGGGGACAGATCAACAACCAAGTAGCGAGAAATCAGAGCAACAGCGCTGGAAATTTGCTTGGACCGAAGGGGATTCCGATGAAACACGTCGGATCTCCACCGAAATCCACGAAGCTTTATCGAGGCGTGAGGCAAAGGCATTGGGGAAAATGGGTGGCGGAGATCCGTCTACCGAGGAACAGAACTCGGCTATGGCTCGGCACCTTCGACACCGCAGAAGAAGCCGCTTTAGCCTATGACAAAGCCGCTTACAAGCTCCGAGGCGACTTCGCCAGACTCAATTTCCCTCACCTCAAGCACCACGGCTCCTCCGTAGGCGGCGATTTCGGCGAGTACAAGCCATTACACTCAGCCGTCGACGCCAAGCTCGAAGCCATCTGCCAAACCTTGGCAGAGTCGCAGAAACAGGGGAAATCGGATCGAAGGAAATCGAAATCATCGGGCTCTTCTACCGTCGGATCGGAGTCTCAGACGCCGACGGTGACTGATTCCGACGACGATCTGAAGACGGCGGATGTCAGATCAAGCGGATCGGAGATCTGTTGCAAGGCGGAGAACTCCTCGTCGCCGGTTTCGGCCGAGAGTGATGAGTCGGCAGGGTCTTCGCCTTTATCGGATCTGACGTTCCCGGATCTGACGGAATCGCCCTGGGAACAATCTACAGAAAGCTGTTTGGATTCTCCGACTAAGTTTTTGCAGTTGGCAGAATCAGTTGTATGTGATTTGTAG | 1104 | 50.18 | MAALMDLYGCREFQSDPYGGELMEALEPFMKAASSSYFPSSSSSSSSSSSSSFPDFSFSSSVQTESTSYPSDCSPPMTHLFSGGFSGQDFHGVEQSASIGLNYLTPFQIQQIQSQFGLQTQIQPVWGQINNQVARNQSNSAGNLLGPKGIPMKHVGSPPKSTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPHLKHHGSSVGGDFGEYKPLHSAVDAKLEAICQTLAESQKQGKSDRRKSKSSGSSTVGSESQTPTVTDSDDDLKTADVRSSGSEICCKAENSSSPVSAESDESAGSSPLSDLTFPDLTESPWEQSTESCLDSPTKFLQLAESVVCDL | 367 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 23739748 | 23740956 | + | ClCG08G010990.2 | Cla08g01096 | 278751 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla08g01096 | 367 | PRINTS | Ethylene responsive element binding protein signature | 187 | 203 | IPR001471 | GO:0003700|GO:0006355 | |
Cla08g01096 | 367 | PRINTS | Ethylene responsive element binding protein signature | 165 | 176 | IPR001471 | GO:0003700|GO:0006355 | |
Cla08g01096 | 367 | ProSiteProfiles | AP2/ERF domain profile. | 164 | 221 | IPR001471 | GO:0003700|GO:0006355 | |
Cla08g01096 | 367 | SUPERFAMILY | DNA-binding domain | 164 | 222 | IPR016177 | GO:0003677 | |
Cla08g01096 | 367 | MobiDBLite | consensus disorder prediction | 305 | 349 | - | - | |
Cla08g01096 | 367 | SMART | rav1_2 | 164 | 227 | IPR001471 | GO:0003700|GO:0006355 | |
Cla08g01096 | 367 | MobiDBLite | consensus disorder prediction | 257 | 349 | - | - | |
Cla08g01096 | 367 | CDD | AP2 | 163 | 223 | IPR001471 | GO:0003700|GO:0006355 | |
Cla08g01096 | 367 | Gene3D | AP2/ERF domain | 164 | 222 | IPR036955 | GO:0003700|GO:0006355 | |
Cla08g01096 | 367 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 | 4 | 347 | - | - | |
Cla08g01096 | 367 | MobiDBLite | consensus disorder prediction | 271 | 289 | - | - | |
Cla08g01096 | 367 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-4 | 4 | 347 | - | - | |
Cla08g01096 | 367 | Pfam | AP2 domain | 165 | 213 | IPR001471 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla07g01421 | Cla-Chr7:31387827 | Cla08g01096 | Cla-Chr8:23739748 | 1.60E-39 | dispersed | |
Cla08g01096 | Cla-Chr8:23739748 | Cla10g01632 | Cla-Chr10:31971690 | 3.63E-24 | dispersed | |
Cla11g01505 | Cla-Chr11:28727353 | Cla08g01096 | Cla-Chr8:23739748 | 5.04E-100 | transposed | |
Cla01g01849 | Cla-Chr1:33368831 | Cla08g01096 | Cla-Chr8:23739748 | 5.34E-90 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
61571 | PF00847 | AP2 | 4.90E-15 | CL0081 | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla08g01096 | K09286 | - | csv:101222833 | 546.969 |