Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01109 ATGACAAAGTGTTTCTTCTTCAGTATTACAGAGACCAAGAATTGGTGTCATCGTTATGGTTTCATCAAATCCGGCCTCCGATCCACCATTACAGATCTCAAAGACGGCACCACAGTTCATTGTTGGGTCCCCAAAAACCCAATTCACACCAAACCCAATCTCCTTCTAATCCATGGCATTGGAGCTAATGCACTTTGGCAATGGGGGGATTTCATTCCTGCTCTCGTACCTCATTTCAATCTCTACATCCCTGATTTGATCTTCTTTGGCGACTCGTTCACAACTCGCCCAGAGAGAACAGAGTGGTTTCAAGCTCAGTGTTTAATCCAAGTTATGGAGGCTAACTCAGTGGAGAAGTTCAGTTTGGTGGGGCTTAGCTATGGAGGATTTGTTGGGTACAGCATCGCGGCGCTACGGCCGGAAATGGTGGAGAAAGTGGTGATTTGTTGCTCTGGGGTTTGTGTGGAAGAGAAGGATTTTAAAGATGGGTTGTTGAAAGTTTCTGATTTGGAGGAAGCTACAGCCATTTTGGTGCCTCAAAAGCCAGAGAAGCTTAAACAGTTGGTGGGTTACTCGTTTTTCCGGCCGCCGCCGATGCGGTTGATGCCCTCTTGTTTGCTCAATGATTTCATTGAGTCAATGTGTTTGGACCATATTGAAGAAAAGAGAGATCTGATTCGAACTATTCCCAGAGGGAGAAAGCTTTCAGATCTTCCCAAGATTCGCCAGCGGACAATGATACTCTGGGGAGAACATGATCAAGTATTTCCTGTAGAATTGGGTCACAGATTGAAACGTAGGCATTTGGGGTACAATGCTACACTTGTGGTAATCAAGAATGCAGGCCATGCCTTCAACTCAGAGGAGCCAAAGGAATTTCTCAACCATTTGATTTCTTTCCTGGTTGATTCATAG 915 45.14 MTKCFFFSITETKNWCHRYGFIKSGLRSTITDLKDGTTVHCWVPKNPIHTKPNLLLIHGIGANALWQWGDFIPALVPHFNLYIPDLIFFGDSFTTRPERTEWFQAQCLIQVMEANSVEKFSLVGLSYGGFVGYSIAALRPEMVEKVVICCSGVCVEEKDFKDGLLKVSDLEEATAILVPQKPEKLKQLVGYSFFRPPPMRLMPSCLLNDFIESMCLDHIEEKRDLIRTIPRGRKLSDLPKIRQRTMILWGEHDQVFPVELGHRLKRRHLGYNATLVVIKNAGHAFNSEEPKEFLNHLISFLVDS 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23866471 23868601 + ClCG08G011110.2 Cla08g01109 278764

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01109 304 SUPERFAMILY alpha/beta-Hydrolases 28 301 IPR029058 -
Cla08g01109 304 Pfam Alpha/beta hydrolase family 54 293 IPR000073 -
Cla08g01109 304 PRINTS Epoxide hydrolase signature 136 149 IPR000639 GO:0003824
Cla08g01109 304 PRINTS Epoxide hydrolase signature 122 135 IPR000639 GO:0003824
Cla08g01109 304 PRINTS Epoxide hydrolase signature 78 93 IPR000639 GO:0003824
Cla08g01109 304 PRINTS Epoxide hydrolase signature 278 300 IPR000639 GO:0003824
Cla08g01109 304 Gene3D alpha/beta hydrolase 21 303 IPR029058 -
Cla08g01109 304 PANTHER SI:DKEY-122A22.2 6 303 - -
Cla08g01109 304 PRINTS Alpha/beta hydrolase fold signature 78 93 IPR000073 -
Cla08g01109 304 PRINTS Alpha/beta hydrolase fold signature 122 135 IPR000073 -
Cla08g01109 304 PRINTS Alpha/beta hydrolase fold signature 136 149 IPR000073 -
Cla08g01109 304 PRINTS Alpha/beta hydrolase fold signature 245 259 IPR000073 -
Cla08g01109 304 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 6 303 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01109 - - - csv:101222914 583.948
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla08g01109 Cla11g01381 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g01652 Cla-Chr7:33786047 Cla08g01109 Cla-Chr8:23866471 1.04E-126 dispersed
Cla08g00981 Cla-Chr8:22498687 Cla08g01109 Cla-Chr8:23866471 6.85E-67 dispersed
Cla08g01109 Cla-Chr8:23866471 Cla11g00413 Cla-Chr11:4692463 2.52E-42 dispersed
Cla01g01829 Cla-Chr1:33184396 Cla08g01109 Cla-Chr8:23866471 7.82E-121 wgd
Cla11g01381 Cla-Chr11:27347943 Cla08g01109 Cla-Chr8:23866471 1.05E-45 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g411 . . . . . . . . Cmo05g00523 . . . . . Sed04g0141 . . Bhi04g00761 Tan02g2392 Cmetu03g0357 . Hepe10g0498 . Lcy13g1562 Cla08g01109 Cam08g1562 Cec08g1136 Cco08g1262 Clacu08g1266 . Cre08g1046 Cone4ag1334 . . . Lsi04g02234 . . Cme03g01864 Blo17g00119 Blo18g00257 . Bda13g01402 . Bpe14g00453 . Bma02g00142 . . . . Cma05g00500 . . Cpe11g00437 . Bhi09g02434 . . . . Mch11g0665 . Cla11g01381 . Cec11g1465 Cco11g1461 Clacu11g1596 Cmu11g1415 Cre11g1835 Lsi08g00965 Csa02g02150 Chy03g01368 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010572 1 2 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 2 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla08g01109 Cla_Chr08 FPKM 2.506604 2.905619 2.269533 2.126456 5.497508 5.614149 4.941993 0.0 0.0 0.0