Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01114 ATGGATATGGGAAGTGATGTTTCCCAATTCGCTATGCACATGGTTCAAGTGATGTTTCCCAATTCGCTATGCACATGGTTCAAAACTGTTTTGAAAAGAGATAAACCTCTTCCTGTTCTATTGATCAGAAGCATCCAGCAGCGCCATGCCGGCCCAGTTTCAAACCGGTGCTTCCCTTTTAACTGTGGCGTTGCTCCCTTCGGCTTTTCCCTCTCCCTCTCGGTTCTCCCTCCCTTTTTTTCGCAATTTACAGAACCTCATGCCATATCCATGGCTTCCACAACTATGGTTGCTTCCCCTTCCAACGATAGTTTCCGCATGAATCCTCTTCCGATCATAGATCTCCGTCTCCTCTCTCAATCCGAGCTCTATTGTCTTTCTCGTTTCTCCTCCTCATCCTCTTCCTCATCTTCAACCTCCCAATCCAACAACGAAGACGACGTTCTAATCCCCAAAATTGATCGATCCGTCTTCAATGAGTCCGCCGGTAGCCGAAAACAAACCTATTCTCGCCTGCGTCTAGCCCCTCGCAAACCCCAATTTTCTTCCTCTTCATCCTCTTCCACAATTCGCCCTCAATCCCCCGACCGCCTTGATACAGAGAGCGCTCAAATTGTTACTCTATTTAAGCAACTCTTCGTTGTAGATTCTCATTGTGCCGTCAACGATAGCTACGGCGACGGAGATGAGGACCTGGTACTTGTTAACCACATTTACGATGAATCGGTACCTGATTCTTCCTACGCTATTTTCCAGAGTATTCCTGTTGATATTATTGATAGCAGTTACGCCCCGATTAAGCGGCGGAGAGGTCGACCGCGGAAGGATGGCAATCGGTTTGCTCAGAGTAATGGGAATGCGGCTTCGGAATTCAAAAACGGATGCGATAAATCGGCGGCGGCGGAGGAGGAGATCGTAATGGTAATGCTGTGA 933 48.02 MDMGSDVSQFAMHMVQVMFPNSLCTWFKTVLKRDKPLPVLLIRSIQQRHAGPVSNRCFPFNCGVAPFGFSLSLSVLPPFFSQFTEPHAISMASTTMVASPSNDSFRMNPLPIIDLRLLSQSELYCLSRFSSSSSSSSSTSQSNNEDDVLIPKIDRSVFNESAGSRKQTYSRLRLAPRKPQFSSSSSSSTIRPQSPDRLDTESAQIVTLFKQLFVVDSHCAVNDSYGDGDEDLVLVNHIYDESVPDSSYAIFQSIPVDIIDSSYAPIKRRRGRPRKDGNRFAQSNGNAASEFKNGCDKSAAAEEEIVMVML 310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23898293 23900281 - ClCG08G011160.2 Cla08g01114 278769

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01114 310 MobiDBLite consensus disorder prediction 161 197 - -
Cla08g01114 310 MobiDBLite consensus disorder prediction 177 197 - -
Cla08g01114 310 PANTHER METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 8 96 285 IPR037472 -
Cla08g01114 310 PANTHER METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 8 96 285 - -
Cla08g01114 310 MobiDBLite consensus disorder prediction 269 291 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01114 - - - csv:101221810 358.221
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g414 . . . . . . . . . . . . . . . . . . . . . . . . Cla08g01114 Cam08g1570 Cec08g1140 Cco08g1267 Clacu08g1271 . Cre08g1052 . Cone7ag1595 Cone17ag1216 Cone20ag0509 . . . . . . . Bda13g01400 . Bpe14g00455 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006623 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 3 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla08g01114 Cla_Chr08 FPKM 16.998718 21.139328 37.097435 37.486771 11.542604 7.889198 11.815186 51.234108 56.607765 53.144821
Cla08g01114 Cla_Chr00 FPKM 26.558252 25.582304 27.233473 27.664045 17.72057 15.304095 14.385902 38.911343 42.545143 39.806763