Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01126 ATGATTAGTTCCTCTATCCACGACGTGACAGTAACTGCGGTTTGCAGACGGCCGGGAGAGCCGCTTCTCATAGAGGAGATTGAAGTTGACCCTCCAAAAATTGGGGAAGTTCGGATCAAAATTCTTTGTACTTCCCTCTGTCATTCTGATGTTACCGTTTGGAATATGAGACAAGAAATTTTTTCATTCCCCATCATTTTTGGACACGAAGCTGTCGGAATTGTGGAAAGTGTGGGAGAAGAAGTGAAGGAAGTGAAAGAAGGGGAAATGGTGTTGCCTGTGTTTCAATCAAATTGCAAAGAATGCAGAGAGTGCAAGAGTTTGAAGAGCAACAAATGCAGTGTTTTTGGGGGCAAATTTGGGATAGGAATGCCAAGAGATGGCACAAGCAGATTTAGGGATGTGAGTGGACACCCATTGAACCATTTCTTATATGTTTCAAGCTTTTCGGAGTATACAGTTGTTGATGTCCATAACCTTGTTCCAATCAATCCGGAGCTTCCTATGGATAAGGCCACCTTGTTTGGCTGTGGGGTCCCCACTGGGATTGGAGCTGCGTGGAAGGTTGCTGACGTGGACGAGGGTTCCACCGTGGCTATCTTCGGCCTTGGTATTGTTGGACTCTCGGTAGCGGAAGGATCAAAACGCCGTAAAGCTTCAAAGATCATCGGCATTGATTTGAATCCTAAAAAATTTGAGATTGCAAAAAAGTTTGGGGTGACCGATTTTATCAATCCAGCTACTTGTGGAGATAAGCCAATTCATGAAGTTATTAAGGAACAAACTGCTGGGGGAGCAGACTACTGCTTTGAGTGCATTGGCTTGGCTTCCCTCATGGAAGAAGCTATCAAAAGCACTAGAGAGGGTTGGGGAAAGACGGTGATTTTGGGAGTAGAGAAAGATGGTGCGGCATTCAAAGTGAAGCCCTTTGATATAATAAATGGGATCACCATCACCGGCGCTCTTTTTGGAGGTCTTAAGCCAAAATCAGACGTTCCAATGCTTATCAACAAGTTTTTGGACAAAGTATGTTCTGATTCTTCCCATTACCCAAACGAAGGATTGACGTGGCAAATTATAATTGGAGATCAACTTTCGCTCTTTCGCTTCGGCTGGAATCATCGGAACCACCGATCGCTTCTTCTTCTTCCATCCATGGCGGAAGCCCAGAGCGAAAAAACCCCTTCCTTAGCTGAGAGCTGTGGTAAATTCCCTGGATTAGATCCCCAGATTCCACTGGAAATAGAAATAGTTGTGAGTTCCATTAGCATGACTGGATTCGCCGGTTTCGACTCCAATAAATGCTTCTGGTACCTTACAATTTCTCTGTGGTATTGTGTTTTTAGAGATGAAAGCAATTTTACCCTTAAGAGCATACAATATGCCTTGAAAGAAAATGAGAATGTGGATATACCAAAGTCCTCTGAAGTAAAAGAGGTGGAGAACCCTGAAAATGCTGCTCCTGCTGAAGTTGTTGTGAAGAATGATGAACCACCTGTTGAAGCTGATGCTGATCAAGGGAGTGACAATTCTCCTGCTCAAGAAAACAATGGAGATGCTCCAGCAGCTGCTGCTGTAGAGGATGTTGAAACCAGTCCTGCTGCTGAAAATGACACTGGAGCTGCCGATGAAAGTAGTGGAGCTGGAGAAGAGGAAAATTCTGGGGATCAAGAAAGCACTGATGAGCAACCTGAGATTAAGCTCGAAACAGCACCAGTAGATTTCCGTTTCCCTACTACAAATCAAACTAGGCATTGCTTCACCCGCTACATTGAGTACCATAGATGCATACAAGCGAAAGGGGAAGGTGCTCCGGAGTGCAACAAGTTTGCGAAATATTATCGTTCTCTTTGCCCAAGTGAATGGGTAGAGAAGTGGAACGAGCAGAGGGAGAATGGAACCTTCCCAGGTCCGCTGTAG 1920 44.79 MISSSIHDVTVTAVCRRPGEPLLIEEIEVDPPKIGEVRIKILCTSLCHSDVTVWNMRQEIFSFPIIFGHEAVGIVESVGEEVKEVKEGEMVLPVFQSNCKECRECKSLKSNKCSVFGGKFGIGMPRDGTSRFRDVSGHPLNHFLYVSSFSEYTVVDVHNLVPINPELPMDKATLFGCGVPTGIGAAWKVADVDEGSTVAIFGLGIVGLSVAEGSKRRKASKIIGIDLNPKKFEIAKKFGVTDFINPATCGDKPIHEVIKEQTAGGADYCFECIGLASLMEEAIKSTREGWGKTVILGVEKDGAAFKVKPFDIINGITITGALFGGLKPKSDVPMLINKFLDKVCSDSSHYPNEGLTWQIIIGDQLSLFRFGWNHRNHRSLLLLPSMAEAQSEKTPSLAESCGKFPGLDPQIPLEIEIVVSSISMTGFAGFDSNKCFWYLTISLWYCVFRDESNFTLKSIQYALKENENVDIPKSSEVKEVENPENAAPAEVVVKNDEPPVEADADQGSDNSPAQENNGDAPAAAAVEDVETSPAAENDTGAADESSGAGEEENSGDQESTDEQPEIKLETAPVDFRFPTTNQTRHCFTRYIEYHRCIQAKGEGAPECNKFAKYYRSLCPSEWVEKWNEQRENGTFPGPL 639
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24002712 24010973 + ClCG08G011280.2 Cla08g01126 278781

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01126 639 Pfam Alcohol dehydrogenase GroES-like domain 35 163 IPR013154 -
Cla08g01126 639 Pfam Zinc-binding dehydrogenase 206 331 IPR013149 -
Cla08g01126 639 Gene3D - 182 321 - -
Cla08g01126 639 PANTHER ALCOHOL DEHYDROGENASE-LIKE 2 12 343 - -
Cla08g01126 639 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 167 340 IPR036291 -
Cla08g01126 639 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 68 82 IPR002328 GO:0008270|GO:0016491
Cla08g01126 639 Gene3D - 13 342 - -
Cla08g01126 639 SUPERFAMILY GroES-like 12 188 IPR011032 -
Cla08g01126 639 SUPERFAMILY Cytochrome c oxidase subunit h 565 638 IPR036549 GO:0005739|GO:0045277
Cla08g01126 639 PANTHER ALCOHOL DEHYDROGENASE 12 343 - -
Cla08g01126 639 Gene3D Cytochrome c oxidase, subunit VIb 561 639 IPR036549 GO:0005739|GO:0045277
Cla08g01126 639 Pfam Cytochrome oxidase c subunit VIb 576 635 IPR003213 GO:0005739|GO:0045277
Cla08g01126 639 MobiDBLite consensus disorder prediction 474 573 - -
Cla08g01126 639 CDD Cyt_c_Oxidase_VIb 564 638 IPR003213 GO:0005739|GO:0045277
Cla08g01126 639 ProSiteProfiles Coiled coil-helix-coiled coil-helix (CHCH) domain profile. 583 626 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01126 K00121 frmA, ADH5, adhC; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] - csv:101209737 584.334
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g00968 Cla-Chr8:22270246 Cla08g01126 Cla-Chr8:24002712 5.57E-55 dispersed
Cla08g01126 Cla-Chr8:24002712 Cla09g00911 Cla-Chr9:9509336 6.91E-102 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g444 . . . . . . . . . . . . . . . . . . . . . . . . Cla08g01126 Cam08g1582 Cec08g1152 Cco08g1279 Clacu08g1283 . Cre08g1065 . . . . . . . Cme03g01849 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g00983 Csa02g02165 Chy03g01352 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000997 1 5 1 1 0 2 3 2 2 4 2 3 4 4 4 4 3 1 4 3 3 4 3 5 1 4 2 2 4 3 84
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla08g01126 Cla_Chr08 FPKM 0.277597 0.711039 3.889702 2.689204 16.295929 13.117982 16.10224 0.0 0.195339 0.0