Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01131 ATGAGTCTTCCCCAAGAAATCGACCATTACATCAAAGAATCAATCGACCATATTCTTGGCCTTCCCATCTCTACAAAAACTCTTGAATTGAAACTCCTTGCTTCTGAAGCCAAAAACCAAAGCCTTGAAGCCCAATGCCTTTCTTTACAGTCTAAATTAAACCAACACATTCTCGCTACCAACAGTGCCAAGGAGGAAGCCAAATTGAATGCACAAGGCTTAAAGAAGGCAATTGAGAGAAACCAAAAATTGAGTGAAGAGAATTCACGTTTGGTGGAGCAATGCAAGAAAATGAAAGCCTTTATGAACAGAGGAAAATTGGCTCTTGATCAAGCCAAAGAAACCCAGATTCGTGTGCATGAGTTAGAAGATGAAGTTGAAGAATTAAAATTGGATTTGAAATTCTTCAAAGATCAACACCAAATGCACAAGTTTCAATTTTCTTCTATGGAGGAAGTTTTGGTTGAGTCAGCTTTATCCCAATTAATTGGAGAAACAGAGTCCTCTGCTGGTGAGTTCTTGTTGGCAAATATTGAGAATGATTCATGCCGGAGATTGCTACATTTGTCGCGGAGTTTAAGGCCTCCAACTCTTAGAGCCCTGAGTTTGGCTGCTAGAATCAAGGCCCTTGACAAGGATAATGAACAACTTCAGATGCTACTCTATACAGCTCAAGGAGAGGCCAAACTGTTATCCGATCAAATCGGTTATCTGTTGGAGGATCAAATGACGTCGTACGATGAGAATGGAGGAGGGACTGGTAAGCCACCAGCTGGCAGTTCCTCTACGAAGGTTGAGAAGAATGAGAGTATCTCTTAA 819 41.15 MSLPQEIDHYIKESIDHILGLPISTKTLELKLLASEAKNQSLEAQCLSLQSKLNQHILATNSAKEEAKLNAQGLKKAIERNQKLSEENSRLVEQCKKMKAFMNRGKLALDQAKETQIRVHELEDEVEELKLDLKFFKDQHQMHKFQFSSMEEVLVESALSQLIGETESSAGEFLLANIENDSCRRLLHLSRSLRPPTLRALSLAARIKALDKDNEQLQMLLYTAQGEAKLLSDQIGYLLEDQMTSYDENGGGTGKPPAGSSSTKVEKNESIS 272
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24044082 24045759 - ClCG08G011330.1 Cla08g01131 278786

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01131 272 Coils Coil 25 45 - -
Cla08g01131 272 Coils Coil 64 94 - -
Cla08g01131 272 Coils Coil 112 139 - -
Cla08g01131 272 PANTHER EARLY ENDOSOME ANTIGEN 1 270 - -
Cla08g01131 272 MobiDBLite consensus disorder prediction 255 272 - -
Cla08g01131 272 MobiDBLite consensus disorder prediction 245 272 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01131 - - - bhj:120076121 296.975
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla08g01131 Cla11g01405 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla11g01405 Cla-Chr11:27603203 Cla08g01131 Cla-Chr8:24044082 1.94E-43 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g455 . . . . Bpe02g00126 . . Bma01g02600 . . Cma01g01629 Cma09g00580 Car01g01238 Car12g00159 . Cpe06g00442 . Bhi04g00784 Tan02g2423 Cmetu03g0174 . Hepe10g0472 . Lcy13g1537 Cla08g01131 Cam08g1588 Cec08g1158 Cco08g1284 Clacu08g1288 . Cre08g1070 . . . . Lsi04g02260 Csa03g04471 Chy04g00230 . . . Bda11g00781 . . . . . Sed05g1576 Cmo01g01675 Cmo09g00564 . . . Car09g00509 . Cpe02g00354 Bhi09g02472 Tan01g3821 Cmetu04g1707 . Hepe01g2152 Mch11g0690 . Cla11g01405 Cam11g1462 Cec11g1490 Cco11g1486 Clacu11g1623 Cmu11g1440 Cre11g1859 . . . Cme04g00256
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013559 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 0 1 0 1 1 1 2 1 1 0 1 1 0 1 0 21
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla08g01131 Cla_Chr08 FPKM 27.67671 27.838579 31.327663 29.814323 26.986004 27.317636 28.677221 53.742023 55.700195 55.215771