Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01133 ATGGCGGTTTCAATTAGCAGAAAACTTTTCCCTGTTGCCACTGGAACTACCCAACTCAACACCAATTGTTCCAGCTGCCCTTACGACTGCCCTTTCGACTGCTACGGTATTCCAGATTTCTACTTCCCACCGCCGCCTCTGCCGCCGCCGCCTCGTCTCTCCGACCACCAAAAACAGCTTCCAGTTATGACCATCGTCCTAATTCTGTTCGTCGCCTTTTTCTTCGCTTTTAGTTTCTACATCATCGTTGTAAAATGCCGATCTTGGCTCACTCGCTCCCGCAACCAAGGGGCAGAGGTGTTGCAATCGGACGTCGGAGAGGGAGAGTTTATGAACGAGAATCAAATCGATCATCCAATTTGGTTCATCACCACCGTTGGGCTTCAGCAATCAGTCATCAATTCGATTACGGTTTGCAAGTACAAGAAGGGCGAAGGTTTAATCGAAGGAACAGATTGCTCTGTTTGTTTGAGTGAATTTCAAGAAGACGAAATGCTTCGGCTATTACCCAAATGCAGCCACGCGTTTCATATTGGTTGTGTTGATACTTGGCTAAGAACTCACACCACTTGCCCTCTCTGTCGAGCTCATATTCTAACTGATTTAGGTCCTGCGAATCAAAACGAAGCTAATTTGAGTGTAAATGAAGAAACCCAGATGGAGAATGAAGAGATTAATGGCCAAGTTTTAGTGGAAAATGAGGGGGTTGTTTCTAGTGGGAGCTCTGAAAACAGAGGAGATGTTGTTGATGAACAGAGGGAAGTTGGGGATGTTCAGATTGAGGAGACAATTCCAAAAGAAGGGAATAATTTTGAATCTGATGATTCTAAAGTTGAAGGAAATGAAAGTATGAGGAACAATGAGATGGATTCTTCTTCAACAACATGA 888 44.48 MAVSISRKLFPVATGTTQLNTNCSSCPYDCPFDCYGIPDFYFPPPPLPPPPRLSDHQKQLPVMTIVLILFVAFFFAFSFYIIVVKCRSWLTRSRNQGAEVLQSDVGEGEFMNENQIDHPIWFITTVGLQQSVINSITVCKYKKGEGLIEGTDCSVCLSEFQEDEMLRLLPKCSHAFHIGCVDTWLRTHTTCPLCRAHILTDLGPANQNEANLSVNEETQMENEEINGQVLVENEGVVSSGSSENRGDVVDEQREVGDVQIEETIPKEGNNFESDDSKVEGNESMRNNEMDSSSTT 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24060947 24061834 + ClCG08G011350.1 Cla08g01133 278788

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01133 295 MobiDBLite consensus disorder prediction 237 295 - -
Cla08g01133 295 CDD RING-H2_PA-TM-RING 152 195 - -
Cla08g01133 295 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 7 293 IPR044675 -
Cla08g01133 295 Pfam Ring finger domain 152 195 IPR001841 -
Cla08g01133 295 SUPERFAMILY RING/U-box 146 206 - -
Cla08g01133 295 SMART ring_2 153 194 IPR001841 -
Cla08g01133 295 MobiDBLite consensus disorder prediction 246 284 - -
Cla08g01133 295 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 127 201 IPR013083 -
Cla08g01133 295 ProSiteProfiles Zinc finger RING-type profile. 153 195 IPR001841 -
Cla08g01133 295 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 7 293 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01133 - - - cmo:103488086 444.506
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00669 Cla-Chr2:7678802 Cla08g01133 Cla-Chr8:24060947 4.14E-11 dispersed
Cla08g01133 Cla-Chr8:24060947 Cla09g01565 Cla-Chr9:31119992 7.07E-49 dispersed
Cla06g00495 Cla-Chr6:6009586 Cla08g01133 Cla-Chr8:24060947 5.37E-06 transposed
Cla01g01816 Cla-Chr1:33048132 Cla08g01133 Cla-Chr8:24060947 4.47E-42 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g458 . . . . Bpe02g00128 . . Bma01g02598 Cmo05g00542 . . . . . Sed04g0166 . . Bhi04g00790 Tan02g2426 Cmetu03g0381 . Hepe10g0470 . Lcy13g1534 Cla08g01133 Cam08g1590 Cec08g1160 Cco08g1286 Clacu08g1290 . Cre08g1072 Cone6ag1544 Cone9ag1461 . . . . . . . . Bda11g00783 . . . . . . . . . . Car05g00465 . Cpe11g00454 . . . . . . . . . . . . . . . Lsi08g00989 Csa02g02174 Chy03g01343 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011623 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla08g01133 Cla_Chr08 FPKM 0.0 0.0 0.0 0.06699 0.0 0.0 0.0 1.122771 1.146246 2.294092