Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla08g01134 | ATGATGGCATTGGAAACTGTGGTTTACCCACAAGATACATTTAGTTATGTTTGCAGGGATTTCTGTTCTTACGGAGGAGGAACTTGGGGTACCTACGACTATGGCTTCCAATTAGAAGAACAAAAAGCCTTCCTTGGTGTCATTGAAAACCAAACAGAGGACCAAAAATTCACCGCTAATTGGGAAGCTTCACCGGAGGAATGCTCAATCAATCAGCCACTCCCCGGTGGACCTATCTACCCGCCGGTGGAAGTAGAACCCACACCACCCCCACCACCACAACCAACTACCGGAAGAAGAAAACGACGGCGGACCCGGAGCACAAAAAACAAAGAAGAAATTGAAAACCAGAGGATGACTCACATCGCTGTGGAACGTAATCGCCGGAAACAAATGAATGAGTATCTTGCCGTTCTCCGATCATTAATGCCGTCTTCCTACGTTCAAAGGGGAGACCAAGCTTCCATTATTGGTGGTGCCATTAACTTTGTCAAGGAATTAGAACAACAATTGCAATTCATTAAAGTCCATAAAGAACAAACTGGCACTTCCCCTTTTGCCGACTTCTTTTCCTTCCCTCAATACTCAACTCGTGCCACAACCCAGTCCAAGAACAACAACAACTCGCCCCATGACTCGTCCATTGCTCACACCCAATGGCCCGCCGGAGACATTGAAGTCACCATGGTCGACACTCATGCCAACCTTAAAATACTGTCCCAAAAACGCCCAAGACAGCTCCTTAAAATGGTCGCTGGATTTCAAAGCTTGAGACTTACAATTCTTCATCTCAATGTTACCACTTCAGATCAAATGGTTCTTTATTCTCTAAGTATCAAGGTTGAAGAAGGATGTCAGTTGAACACGGTGGATGAAATTGCTGCAGCTGTGAATCAAATTCTACTCTCTATTCAAGAGGAAGCTGTCTTCAGTTGA | 936 | 45.09 | MMALETVVYPQDTFSYVCRDFCSYGGGTWGTYDYGFQLEEQKAFLGVIENQTEDQKFTANWEASPEECSINQPLPGGPIYPPVEVEPTPPPPPQPTTGRRKRRRTRSTKNKEEIENQRMTHIAVERNRRKQMNEYLAVLRSLMPSSYVQRGDQASIIGGAINFVKELEQQLQFIKVHKEQTGTSPFADFFSFPQYSTRATTQSKNNNNSPHDSSIAHTQWPAGDIEVTMVDTHANLKILSQKRPRQLLKMVAGFQSLRLTILHLNVTTSDQMVLYSLSIKVEEGCQLNTVDEIAAAVNQILLSIQEEAVFS | 311 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 24069718 | 24071384 | - | ClCG08G011360.1 | Cla08g01134 | 278789 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla08g01134 | 311 | Pfam | Helix-loop-helix DNA-binding domain | 117 | 168 | IPR011598 | GO:0046983 | |
Cla08g01134 | 311 | MobiDBLite | consensus disorder prediction | 63 | 113 | - | - | |
Cla08g01134 | 311 | Gene3D | - | 110 | 180 | IPR036638 | GO:0046983 | |
Cla08g01134 | 311 | PANTHER | HELIX-LOOP-HELIX-LIKE PROTEIN | 2 | 310 | - | - | |
Cla08g01134 | 311 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 116 | 167 | IPR011598 | GO:0046983 | |
Cla08g01134 | 311 | MobiDBLite | consensus disorder prediction | 75 | 96 | - | - | |
Cla08g01134 | 311 | SMART | finulus | 122 | 173 | IPR011598 | GO:0046983 | |
Cla08g01134 | 311 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 116 | 184 | IPR036638 | GO:0046983 | |
Cla08g01134 | 311 | PANTHER | MAX DIMERIZATION, MAD | 2 | 310 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla03g01613 | Cla-Chr3:31978847 | Cla08g01134 | Cla-Chr8:24069718 | 5.20E-77 | dispersed | |
Cla05g00351 | Cla-Chr5:3180812 | Cla08g01134 | Cla-Chr8:24069718 | 5.43E-49 | dispersed | |
Cla05g00577 | Cla-Chr5:5276215 | Cla08g01134 | Cla-Chr8:24069718 | 8.81E-41 | dispersed | |
Cla05g00829 | Cla-Chr5:8133011 | Cla08g01134 | Cla-Chr8:24069718 | 2.91E-07 | dispersed | |
Cla08g01134 | Cla-Chr8:24069718 | Cla09g01111 | Cla-Chr9:12068621 | 1.03E-70 | dispersed | |
Cla08g01134 | Cla-Chr8:24069718 | Cla02g01570 | Cla-Chr2:30378559 | 3.11E-87 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
61573 | PF00010 | HLH | 4.30E-10 | No_clan | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla08g01134 | - | - | csv:101218813 | 506.523 |