Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01134 ATGATGGCATTGGAAACTGTGGTTTACCCACAAGATACATTTAGTTATGTTTGCAGGGATTTCTGTTCTTACGGAGGAGGAACTTGGGGTACCTACGACTATGGCTTCCAATTAGAAGAACAAAAAGCCTTCCTTGGTGTCATTGAAAACCAAACAGAGGACCAAAAATTCACCGCTAATTGGGAAGCTTCACCGGAGGAATGCTCAATCAATCAGCCACTCCCCGGTGGACCTATCTACCCGCCGGTGGAAGTAGAACCCACACCACCCCCACCACCACAACCAACTACCGGAAGAAGAAAACGACGGCGGACCCGGAGCACAAAAAACAAAGAAGAAATTGAAAACCAGAGGATGACTCACATCGCTGTGGAACGTAATCGCCGGAAACAAATGAATGAGTATCTTGCCGTTCTCCGATCATTAATGCCGTCTTCCTACGTTCAAAGGGGAGACCAAGCTTCCATTATTGGTGGTGCCATTAACTTTGTCAAGGAATTAGAACAACAATTGCAATTCATTAAAGTCCATAAAGAACAAACTGGCACTTCCCCTTTTGCCGACTTCTTTTCCTTCCCTCAATACTCAACTCGTGCCACAACCCAGTCCAAGAACAACAACAACTCGCCCCATGACTCGTCCATTGCTCACACCCAATGGCCCGCCGGAGACATTGAAGTCACCATGGTCGACACTCATGCCAACCTTAAAATACTGTCCCAAAAACGCCCAAGACAGCTCCTTAAAATGGTCGCTGGATTTCAAAGCTTGAGACTTACAATTCTTCATCTCAATGTTACCACTTCAGATCAAATGGTTCTTTATTCTCTAAGTATCAAGGTTGAAGAAGGATGTCAGTTGAACACGGTGGATGAAATTGCTGCAGCTGTGAATCAAATTCTACTCTCTATTCAAGAGGAAGCTGTCTTCAGTTGA 936 45.09 MMALETVVYPQDTFSYVCRDFCSYGGGTWGTYDYGFQLEEQKAFLGVIENQTEDQKFTANWEASPEECSINQPLPGGPIYPPVEVEPTPPPPPQPTTGRRKRRRTRSTKNKEEIENQRMTHIAVERNRRKQMNEYLAVLRSLMPSSYVQRGDQASIIGGAINFVKELEQQLQFIKVHKEQTGTSPFADFFSFPQYSTRATTQSKNNNNSPHDSSIAHTQWPAGDIEVTMVDTHANLKILSQKRPRQLLKMVAGFQSLRLTILHLNVTTSDQMVLYSLSIKVEEGCQLNTVDEIAAAVNQILLSIQEEAVFS 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24069718 24071384 - ClCG08G011360.1 Cla08g01134 278789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01134 311 Pfam Helix-loop-helix DNA-binding domain 117 168 IPR011598 GO:0046983
Cla08g01134 311 MobiDBLite consensus disorder prediction 63 113 - -
Cla08g01134 311 Gene3D - 110 180 IPR036638 GO:0046983
Cla08g01134 311 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 2 310 - -
Cla08g01134 311 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 116 167 IPR011598 GO:0046983
Cla08g01134 311 MobiDBLite consensus disorder prediction 75 96 - -
Cla08g01134 311 SMART finulus 122 173 IPR011598 GO:0046983
Cla08g01134 311 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 116 184 IPR036638 GO:0046983
Cla08g01134 311 PANTHER MAX DIMERIZATION, MAD 2 310 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g01613 Cla-Chr3:31978847 Cla08g01134 Cla-Chr8:24069718 5.20E-77 dispersed
Cla05g00351 Cla-Chr5:3180812 Cla08g01134 Cla-Chr8:24069718 5.43E-49 dispersed
Cla05g00577 Cla-Chr5:5276215 Cla08g01134 Cla-Chr8:24069718 8.81E-41 dispersed
Cla05g00829 Cla-Chr5:8133011 Cla08g01134 Cla-Chr8:24069718 2.91E-07 dispersed
Cla08g01134 Cla-Chr8:24069718 Cla09g01111 Cla-Chr9:12068621 1.03E-70 dispersed
Cla08g01134 Cla-Chr8:24069718 Cla02g01570 Cla-Chr2:30378559 3.11E-87 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61573 PF00010 HLH 4.30E-10 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01134 - - csv:101218813 506.523