Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01139 ATGATTGTATGCATGTCTCTAGGCTCATGTCATTCTATCGAACGAGATTACTATGAAATTCTGGGGGTTCAACCCAATGCCAGTCGAGAAGAGGTTAAAAAGGCGTACCATGCGGTGAGTGGATTAATGAAATCGGATATGCGGGGGATGTGGTTGCAACTGCTTTTGGCGAAAAAGTACCATCCAGATGCAAATAAGAACAATCCTTCTGCCAAGAGGAAATTTCAGGAGATAAGAGAAGCCTATGAGACTCTGCAGGATTCTGAGAAGAGATCCCAATATGACCAGAGGCGTGGTGGAGAATTTGAAAATCTAGGGTTTGGTGCTGGTGACGCAGAGGGGTTTAGCTATACTTATCAAACCCATTTTTCTGACTCATTTCAAAAGATTTTCTCTGAGATCTTTGAACATGAGACCAGCCGTTTTACCTCAGATATTCAGGTTGACCTGTCATTATCTTTTACCGAAGCTGCAAAAGGATGCACAAAGCATTTGTCCTTTGATGCTTTTGTTCCCTGTGACTCTTGCTATGGGCGTGGCTATCCAGTAAATGCAACGAAAAGAAGTTGCCCTACTTGCAGAGGTTTAGGTAGAGTTACTATTCCTCCCTTTAAAGCGACATGCACCACTTGCAAAGGATCAGGTCAAATCATTAAGGAATTGTGCGTGCAATGCAGGGGAATGGGGGTTGTGGAGGGTGTCAAGGAGGTTACAGTTACTATACCTGCTGGGGTTGATTCTGGAGATACAATTCGTGTACCAGAAGCTGGTAATAGTGGTGGACGAGAAAGTCATCCTGGCAACTTGATCATTAAATTGAAGGCAAAAAACCACTTACATTTTTCTTCAGCTTACTTTAGCAATGTTGCTGAAGATCGTGTCTTTAAGAGGGATGGTGTGGATATTTATGTGGATTCCAATATCAGCTTTACTCAAGCTATTCTTGGTGGCAAGGTTGAGGTTCCAACATTGTCAGGCAGGATACAAATAAATATACCAAAGGGCGTTCAGCCAGGACAACTCTTAGTACTGAGAGGGAAAGGATTGCCAAAACATGGGCTTTTTGTTGATCGTGGAGATCAATATGTGCGGTTCCGTATTAAATTTCCAACTGCAATAAGTGAACGCCAACGTGCCATTTTAGAAGAGTTTGCTGAAGAAGAAATAAAGAATGGGATTGACAACTCAAGTGAAGCAAGTTGGTGGCAACAAATTCTTAACCGTGTTGGAGAACCTATGTTTGTTCTTGAAATGTCCCTATTGATCTTGTTCGTTATAGATACATGGTATAAGGTCAATTTTTCAGTGCCTGGGTTGCAGTTTCAAATTTGTAAAGATTACCCGAGCTACATTACACTTGTTGAGAAAACTTGCATAGATATTACATTGAGTAGATGGAAGATCAATGAATCTCTTCGCTGGAAGGAAGTTCTTTCTTTTCTTCGTTCCTCCACAAGCTTTCCTGTAGGTTTGATCCATTACTTTCGAGATGCTGAGCGGCTTAGGTTTTTGCTATGA 1518 41.63 MIVCMSLGSCHSIERDYYEILGVQPNASREEVKKAYHAVSGLMKSDMRGMWLQLLLAKKYHPDANKNNPSAKRKFQEIREAYETLQDSEKRSQYDQRRGGEFENLGFGAGDAEGFSYTYQTHFSDSFQKIFSEIFEHETSRFTSDIQVDLSLSFTEAAKGCTKHLSFDAFVPCDSCYGRGYPVNATKRSCPTCRGLGRVTIPPFKATCTTCKGSGQIIKELCVQCRGMGVVEGVKEVTVTIPAGVDSGDTIRVPEAGNSGGRESHPGNLIIKLKAKNHLHFSSAYFSNVAEDRVFKRDGVDIYVDSNISFTQAILGGKVEVPTLSGRIQINIPKGVQPGQLLVLRGKGLPKHGLFVDRGDQYVRFRIKFPTAISERQRAILEEFAEEEIKNGIDNSSEASWWQQILNRVGEPMFVLEMSLLILFVIDTWYKVNFSVPGLQFQICKDYPSYITLVEKTCIDITLSRWKINESLRWKEVLSFLRSSTSFPVGLIHYFRDAERLRFLL 505
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24160118 24172074 - ClCG08G011410.2 Cla08g01139 278794

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01139 505 PRINTS DnaJ domain signature 18 36 IPR001623 -
Cla08g01139 505 PRINTS DnaJ domain signature 70 90 IPR001623 -
Cla08g01139 505 PRINTS DnaJ domain signature 53 68 IPR001623 -
Cla08g01139 505 PRINTS DnaJ domain signature 90 109 IPR001623 -
Cla08g01139 505 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 160 231 IPR036410 -
Cla08g01139 505 SMART dnaj_3 15 90 IPR001623 -
Cla08g01139 505 Pfam DnaJ domain 56 95 IPR001623 -
Cla08g01139 505 Gene3D DnaJ domain 13 143 IPR036869 -
Cla08g01139 505 SUPERFAMILY HSP40/DnaJ peptide-binding domain 144 282 IPR008971 GO:0006457|GO:0051082
Cla08g01139 505 PANTHER CHAPERONE PROTEIN DNAJ 1, MITOCHONDRIAL 6 409 - -
Cla08g01139 505 Gene3D - 169 202 - -
Cla08g01139 505 Gene3D - 203 237 - -
Cla08g01139 505 Gene3D - 291 399 - -
Cla08g01139 505 ProSiteProfiles dnaJ domain profile. 16 98 IPR001623 -
Cla08g01139 505 ProSitePatterns Nt-dnaJ domain signature. 75 94 IPR018253 -
Cla08g01139 505 ProSiteProfiles Zinc finger CR-type profile. 160 234 IPR001305 GO:0031072|GO:0051082
Cla08g01139 505 CDD DnaJ_C 144 371 - -
Cla08g01139 505 Hamap Chaperone protein DnaJ [dnaJ]. 13 412 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Cla08g01139 505 Pfam DnaJ central domain 173 229 IPR001305 GO:0031072|GO:0051082
Cla08g01139 505 CDD DnaJ 16 87 IPR001623 -
Cla08g01139 505 SUPERFAMILY HSP40/DnaJ peptide-binding domain 294 381 IPR008971 GO:0006457|GO:0051082
Cla08g01139 505 Gene3D - 144 273 - -
Cla08g01139 505 SUPERFAMILY Chaperone J-domain 15 123 IPR036869 -
Cla08g01139 505 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 6 409 - -
Cla08g01139 505 Pfam DnaJ C terminal domain 146 370 IPR002939 -
Cla08g01139 505 CDD DnaJ_zf 173 229 IPR001305 GO:0031072|GO:0051082
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01139 - - - csv:101208756 679.093
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g01139 Cla-Chr8:24160118 Cla10g00861 Cla-Chr10:19739948 1.25E-57 dispersed
Cla08g01139 Cla-Chr8:24160118 Cla09g00355 Cla-Chr9:3481990 1.55E-84 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g470 . . Bda01g00899 . . . . . Cmo05g00549 . . . . . . . . Bhi04g00799 . . . . . Lcy13g1511 Cla08g01139 Cam08g1598 Cec08g1169 Cco08g1296 Clacu08g1298 . Cre08g1081 . Cone7ag1258 . . . . . Cme03g01833 . Blo18g00120 . . . . Bma01g01394 . . . . . Cma05g00520 Car05g00471 . . . . . . . . . . . . . . . . . Lsi08g00997 Csa02g02181 Chy03g01336 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011221 1 3 1 2 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla08g01139 Cla_Chr08 FPKM 0.0 0.0 0.482901 0.0 0.0 0.300337 0.0 0.840615 0.408508 0.513063