Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01140 ATGCTCAGTCCTCCCACAGACCGGGCCTCTGGGGGTTTATTGAGTTATGCTTGTGTTATGCATCGCTCAGTAATGGGCAATATTTATAACATCGGTTTTTCTGGACCCACAAAAGGGACGACCATGATATTCCTTCGCGCCAATGCGCAAGCAAAGCAATCGATGACGCGGTGGCTTCGCGCTTCAGAGGTCGCCGCTCGAACGGAATCGGTGATGACGAGGTCTCTCCGCTCCGGCACCGGACGAATTCACTTCCCTCTCCAAGCATGGAGGCCTAGATCGTCACTTACTTCGCCAGTCGACTCAATGGACACCATTTCTGCTGTATCCTCCAAAACCCTACAAAACGGTAGCGACGATGGCAACTCCAATCAGGAATTTATGAAGCTCAAATTACCTCGGAATAGTGTGACCACCGTGCTTCAGAATGGCAACTGTGAAGCTCAAAGGACCTCAATCACTAAGCTTCGGCGTGTTGTCAAGAAACTCTGCAAATCGAAGCGCTTTGAGCGTGCGCTAGAGGTACTAATGTCGATGGAAACTCGAGATAATTTGCGTATGACCCCGGCTGAACATGCTCTCCGATTGGAATTGACAATCAAAGTGCACGGTTTACTGAAAGCTGAAGATTACTTCGATCAATTGCCCACCATAACCTCTAAGAAAGCTTCATCTCTCCCTCTTCTTCATGGTTATGTCAAAGAGAGGAACACAGAAAAAGCTGAGGCTTTCATGGTGAAGCTAAGGGACTTGGGACTGGTTGTGAACCATCATCTTTACAATGAGATGATGAAACTATATGTAGCCACATCTCAAAATGAAAAAGTTCCTCTTGTTATAAGGGACATGAAGCAAAATCAAATACAGAGAAATGTTCTCTCTTACAACCTTTGGATGAATGCTTGTAATGAGGTATATGGGGTTGGGTCAGTGGAGTTGGTATTTGAAGAAATGCTGACTGATAAGAACGTTCAAGTGGGATGGAGCACTCTGTCTACCCTGGCTAAAGTTTACATACAGGAAGGCCTTGTTGACAAAGCGTTTGCAGCCTTAAAAGATGCAGAGAAGAAGCTATCCCCATGTAACAGGCTTGGATATTTCTTCTTAATCACATTATATGCCTCTTTGAAGGATAAGAAGGGAGTTTTTCGAGTTTGGAGAGCTAGTAAAGCTGTAAATGGCAGACCCACTTGTGCTAATTACATGTGTATACTGCTGTGTTTGGTGAAGGTAGGAGAGATAGATGAGGCAGAGAAAGTATTCAAGGAATGGGAGTTGAATTGTCGTAACTATGACATTAGAGTTTCCAATGTTCTTTTGGGTGCATATGTGAGAAATGGATTGTTAGAGAAAGCCGAGTCATTGCATATGCGCACACTGGGGAGAGGTGGTAGTCCAAATTATAAAACATGGGAGATTCTCATGGAGGGGTGGATGATCCATCCAAATTGGGAAGAAGATCATTTGAAGAGGGAGGAAGCTGTTGAAGGTGACGTGTTTTATCTCGACATCATGTGA 1518 44.66 MLSPPTDRASGGLLSYACVMHRSVMGNIYNIGFSGPTKGTTMIFLRANAQAKQSMTRWLRASEVAARTESVMTRSLRSGTGRIHFPLQAWRPRSSLTSPVDSMDTISAVSSKTLQNGSDDGNSNQEFMKLKLPRNSVTTVLQNGNCEAQRTSITKLRRVVKKLCKSKRFERALEVLMSMETRDNLRMTPAEHALRLELTIKVHGLLKAEDYFDQLPTITSKKASSLPLLHGYVKERNTEKAEAFMVKLRDLGLVVNHHLYNEMMKLYVATSQNEKVPLVIRDMKQNQIQRNVLSYNLWMNACNEVYGVGSVELVFEEMLTDKNVQVGWSTLSTLAKVYIQEGLVDKAFAALKDAEKKLSPCNRLGYFFLITLYASLKDKKGVFRVWRASKAVNGRPTCANYMCILLCLVKVGEIDEAEKVFKEWELNCRNYDIRVSNVLLGAYVRNGLLEKAESLHMRTLGRGGSPNYKTWEILMEGWMIHPNWEEDHLKREEAVEGDVFYLDIM 505
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24171301 24173607 + ClCG08G011420.1 Cla08g01140 278795

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01140 505 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 432 466 IPR002885 -
Cla08g01140 505 Pfam Pentatricopeptide repeat domain 248 302 IPR002885 -
Cla08g01140 505 PANTHER OS12G0527900 PROTEIN 95 479 - -
Cla08g01140 505 Coils Coil 414 434 - -
Cla08g01140 505 Gene3D Tetratricopeptide repeat domain 152 362 IPR011990 GO:0005515
Cla08g01140 505 PANTHER OS02G0796400 PROTEIN 95 479 - -
Cla08g01140 505 Gene3D Tetratricopeptide repeat domain 363 498 IPR011990 GO:0005515
Cla08g01140 505 Pfam PPR repeat 401 424 IPR002885 -
Cla08g01140 505 Pfam PPR repeat 161 182 IPR002885 -
Cla08g01140 505 Pfam PPR repeat 437 458 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01140 - - - bhj:120075607 791.956
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g01140 Cla-Chr8:24171301 Cla09g00642 Cla-Chr9:6071618 5.42E-66 dispersed
Cla08g01140 Cla-Chr8:24171301 Cla03g00559 Cla-Chr3:6272269 2.76E-61 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g471 . . . . . . . . Cmo05g00550 . . . . . Sed04g0176 . . Bhi04g00800 Tan02g2436 Cmetu03g0383 . Hepe10g0460 . Lcy13g1510 Cla08g01140 Cam08g1599 Cec08g1170 Cco08g1297 Clacu08g1299 . Cre08g1082 . . Cone17ag1195 . . . . Cme03g01832 . . . Bda13g01373 . Bpe14g00471 . . . . . . Cma05g00521 Car05g00472 . Cpe11g00462 . . . . . . . . . . . . . . . Lsi08g00998 Csa02g02182 Chy03g01335 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012851 1 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla08g01140 Cla_Chr08 FPKM 106.425758 109.310577 131.532761 138.250122 187.651932 185.101837 179.179901 252.376465 259.607697 245.088104