Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01149 ATGATGGGCCCACCTCCCCAGACAGCAGCTCCTTCTGCTTCTGCCATAGTACACGTGTCAGCATGGGACGAAAAAGACAGCATCCCAGTACGTTTGGCTACTCTTCGGCGGCTTCTGGGCTCTGTTTTTCGCTTTGATTGGGAGATTGGAACAGAGAGAGGGGAAGAGAAAAAGGGGAAAGGGATTTTTTTAGCAATGGCTCCTAGTTTTGACCTTGCTGTTTCTAACCTTTTATGTGGTGAAGAGAATTGCATTTTTGATAATAACGACGACGATGATGAAACAGTAGTTGAGGAGTTCTTGATGGCTCCTTATTATCTTAGAACTCGTCCGAATCGGAACCCCCACCGTGGCGGCGGTGGCGACAGTGATGATGGGTTGCCGTTTATGAGCGATGAATGTTTGATTGAAATGGTTGAGAAGGAAACCCATCACTTGCCTGTTGATGGGTATCTCGTGAAGTTGCAGAACGGCGACTTGGATGTTGGAGCAAGAAAAGAGGCCGTCGATTGGATTCAAAAGGTGAGTGCTCATTTCAGTTTTGGACCTCTCTGTACATACTTGGCTGTAAACTACTTGGATCGTTTCCTCTCTGCTTACGATCTACCCAAAGGTAAAGCTTGGACAATGCAGTTGCTTGCTGTGGCATGTATGTCCCTTGCAGCCAAAATGGAGGAGGCTGAAGTCCCACTCTCTTTGGATTTACAGGTGGGTGGATCAAAATTTGTGTTTGAAGCAAGAACCATTGAAAGAATGGAGCTTTTAGTCTTGACAACATTGGGGTGGAGAATGCAAGCAGTTACACCTTTCTCTTTTATCGATCATTACCTCCGCAAGATTAACGATGACGAACTCTCTATCAAAATGTCGATCACCCGATCGATTCATCTACTCTTGAACATAATACAAGGGATTGACTTCTTGGAATTCAAACCTTCTGAAATTGCTGCAGCTGTGGCAATATCAGTAGCTGGGCAAGCTCAATCAGTGGACCCTGAGAGAGCAATTCCTCTTCTCATTCAGCAACTCCAAATGGAAAGAGTTCTGAAGTGTCTTAATTTAATCAATGACATGTTCTTAACCTGTGGGGGTGGGATGGTGAAGGACTCGAGAGTGTCGACGTCGGAGCCCCGGAGCCCGAGCGGGGTGTTGGACGTGACGTGTTTAAGTTATAAAAGCAATGATACAGCAGTTGGGTCATGTGCAAACTCTTCTCATCATACCAGCTCAGAGGCTACAAAGAGGAGGAGACTGAACAGACCCTGTGAAGTGGAGCTATAG 1281 46.14 MMGPPPQTAAPSASAIVHVSAWDEKDSIPVRLATLRRLLGSVFRFDWEIGTERGEEKKGKGIFLAMAPSFDLAVSNLLCGEENCIFDNNDDDDETVVEEFLMAPYYLRTRPNRNPHRGGGGDSDDGLPFMSDECLIEMVEKETHHLPVDGYLVKLQNGDLDVGARKEAVDWIQKVSAHFSFGPLCTYLAVNYLDRFLSAYDLPKGKAWTMQLLAVACMSLAAKMEEAEVPLSLDLQVGGSKFVFEARTIERMELLVLTTLGWRMQAVTPFSFIDHYLRKINDDELSIKMSITRSIHLLLNIIQGIDFLEFKPSEIAAAVAISVAGQAQSVDPERAIPLLIQQLQMERVLKCLNLINDMFLTCGGGMVKDSRVSTSEPRSPSGVLDVTCLSYKSNDTAVGSCANSSHHTSSEATKRRRLNRPCEVEL 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24274694 24280436 - ClCG08G011510.2 Cla08g01149 278804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01149 426 PANTHER CYCLINS 66 418 IPR039361 -
Cla08g01149 426 SUPERFAMILY Cyclin-like 250 360 IPR036915 -
Cla08g01149 426 SMART cyclin_7 170 258 IPR013763 -
Cla08g01149 426 PANTHER CARBOXY-TERMINAL DOMAIN CYCLIN 66 418 - -
Cla08g01149 426 Gene3D - 137 346 - -
Cla08g01149 426 Pfam Cyclin, N-terminal domain 138 264 IPR006671 -
Cla08g01149 426 MobiDBLite consensus disorder prediction 400 420 - -
Cla08g01149 426 Gene3D - 148 265 - -
Cla08g01149 426 CDD CYCLIN 165 257 IPR013763 -
Cla08g01149 426 Pfam Cyclin, C-terminal domain 267 359 IPR004367 -
Cla08g01149 426 SUPERFAMILY Cyclin-like 129 264 IPR036915 -
Cla08g01149 426 SMART Cyclin_C_2 267 392 IPR004367 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00627 Cla-Chr2:6991298 Cla08g01149 Cla-Chr8:24274694 6.88E-41 dispersed
Cla02g01123 Cla-Chr2:24169473 Cla08g01149 Cla-Chr8:24274694 7.14E-33 dispersed
Cla08g01149 Cla-Chr8:24274694 Cla10g00969 Cla-Chr10:22769980 1.17E-57 dispersed
Cla01g01805 Cla-Chr1:32976927 Cla08g01149 Cla-Chr8:24274694 1.53E-98 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01149 K18810 - csv:101216206 628.246