Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01151 ATGCCGCCACTGGGTGTGCAGCTCTCTGTAACAGAACGTCAGGTGACGATGGATAATGGCATAGTCCAAGTCACGTTATCAAACCCAGATGGCATAGTGATTGGAATTCGATACAATGGAGTCGACAATGTGCTCGAAGTTCTCAACGACGAATCTAACCGAGGGTACTGGGACCTCGTGTGGAACTCATCAGCGACCACAACTGGATTGTTTGATGTGATAAAGTCTACAGGTTTTCAGGTTATAATTGAAAATGAAGACCAAGTGGAGCTCTCCTTTACCAGAACATGGGATCTGTCTCTCGAGGGAAAGCTTGTGCCTTTAGAGATTGATAAAAGGTTTATAATGCTCCGGGGTTCGTCTGGGTTCTATTCTTACGCTATTTACCAACACTGGAAAGAATGGCCTGGTTTCAACCTTGGTGAAACCAGACTCGCCTTCAAACTCAGAAAAGACAAGTTTCACTATATGGCCATGGCAGACAACAGACAGAGATACATGCCGCTTCCAGATGATCGCTCTCCGCCAAGAGGCCGAGCCCTGGCATATCCGGAGGCTGTCCTGCTCGTTGACCCCATTGAGCCTGAGCTCCAGGGAGAGGTGGATGACAAGTATCAGTACTCATGCGACAACAAAGATAGCTGCCTACATGGGTGGATATCCACCGATCCGGCAGTCGGATTCTGGCTAATCACCCCAAGCAATGAGTTCCGATCCGGTGGACCCGTTAAACAGAACCTTACTTCACACGTCGGCCCAACCACCCTAGCTGTTTTTATAAGCGCCCATTACGCGGGAGAGGACCTGGTGCCGAAAATCGGAGCCGGTGAGGAGTGGAAGAAAGTTTTCGGCCCTGTGTTCATCTATCTCAACTCCACTTACGATTCCACCGACGCACTTCAGCTCTGGGAAGATGCCAAAGCACAGGCGACGATCGAAGTCCAAAGTTGGCCCTACAGCTTCCCTGCTTCGGATGATTTTCCAAAGTCAAACCAACGGGGTAATATCAGTGGTAGACTATTTGTCAAAGATAGCTACGTTAGTGAAGACTTGATACCAGCAGACGGTGCGTTTGTTGGCCTGGCTACACCAGGAGACGTAGGATCATGGCAACGAGAGAGCAAGGGTTACCAATTTTGGAGTAGAGCAGATGAAAGTGGAAACTTTTTCATCGACGGCGTACGGCCCGGCGACTACAATCTGTATGCATGGGTTCCCGGCTTTATTGGAGATTATCGTTACGACGCTCTCATCAACATTACAGAAGGCAGCGAGATAGACATGGATGACATAACATACGAGCCTCCGAGACAAGGGCCTACGCTATGGGAAATAGGCATCCCAGATCGCTCAGCAGCAGAGTTCTATGTTCCAGATCCAAATCCCAACCACGTCAATAAGCTCTATCTTAACCATCCTGATAAGTTTCGACAGTACGGACTATGGGAAAGATACAGTGAATTGTATTCCGACGCAGACTTGGTTTATACTGTTGGTGTCAGTGACTACACTAAGGATTGGTTCTTCGCTCAGGTTACCAGGAAGACAGAAAACGGAACATATAAGGGAACAACATGGCAAGTAAAGTTCAAGTTAGACAACGTCGACAACGAAGCAACATACAAGCTTTGGGTCGCATTGGCCTCCGCTTCACTTGCAGAATTACAGGTTGGAGTTAATGAGGCTAAAGCAAAGCCAGTGTTCTCGAGTGGACTGATCGGAAGGGACAATTCAATCGCGCGACACGGCATTCATGGCCTGCATTGGGTTTACAACGTGGACATTCCGGGCAATCGGCTGGTTACCGGCGACAACACCATCTTCTTCACGCAGCCTAGAAGCACAGGTCCTTTTCAAGCGATTATGTATGATTATATTCGTCTGGAAGCTCCTCCACCTCCTTCCTCCGCCCATCCCTTGGAATAA 1926 48.65 MPPLGVQLSVTERQVTMDNGIVQVTLSNPDGIVIGIRYNGVDNVLEVLNDESNRGYWDLVWNSSATTTGLFDVIKSTGFQVIIENEDQVELSFTRTWDLSLEGKLVPLEIDKRFIMLRGSSGFYSYAIYQHWKEWPGFNLGETRLAFKLRKDKFHYMAMADNRQRYMPLPDDRSPPRGRALAYPEAVLLVDPIEPELQGEVDDKYQYSCDNKDSCLHGWISTDPAVGFWLITPSNEFRSGGPVKQNLTSHVGPTTLAVFISAHYAGEDLVPKIGAGEEWKKVFGPVFIYLNSTYDSTDALQLWEDAKAQATIEVQSWPYSFPASDDFPKSNQRGNISGRLFVKDSYVSEDLIPADGAFVGLATPGDVGSWQRESKGYQFWSRADESGNFFIDGVRPGDYNLYAWVPGFIGDYRYDALINITEGSEIDMDDITYEPPRQGPTLWEIGIPDRSAAEFYVPDPNPNHVNKLYLNHPDKFRQYGLWERYSELYSDADLVYTVGVSDYTKDWFFAQVTRKTENGTYKGTTWQVKFKLDNVDNEATYKLWVALASASLAELQVGVNEAKAKPVFSSGLIGRDNSIARHGIHGLHWVYNVDIPGNRLVTGDNTIFFTQPRSTGPFQAIMYDYIRLEAPPPPSSAHPLE 641
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24302411 24308701 + ClCG08G011530.2 Cla08g01151 278806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01151 641 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 632 - -
Cla08g01151 641 Pfam Polysaccharide lyase family 4, domain II 355 426 IPR029413 -
Cla08g01151 641 SUPERFAMILY Galactose mutarotase-like 11 292 IPR011013 GO:0003824|GO:0005975|GO:0030246
Cla08g01151 641 CDD RGL4_C 443 629 - -
Cla08g01151 641 Gene3D - 439 629 - -
Cla08g01151 641 CDD RGL4_M 332 431 IPR029413 -
Cla08g01151 641 Gene3D - 5 301 IPR014718 GO:0030246
Cla08g01151 641 CDD RGL4_N 8 293 - -
Cla08g01151 641 Pfam Polysaccharide lyase family 4, domain III 441 628 IPR029411 -
Cla08g01151 641 SUPERFAMILY Starch-binding domain-like 330 430 IPR013784 GO:0030246
Cla08g01151 641 SUPERFAMILY Galactose-binding domain-like 439 629 IPR008979 -
Cla08g01151 641 Pfam Rhamnogalacturonate lyase family 9 201 IPR010325 -
Cla08g01151 641 Gene3D - 329 429 - -
Cla08g01151 641 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 632 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g02136 Cla-Chr1:35566919 Cla08g01151 Cla-Chr8:24302411 0 dispersed
Cla08g01151 Cla-Chr8:24302411 Cla10g00791 Cla-Chr10:16105616 0 dispersed
Cla01g01783 Cla-Chr1:32779400 Cla08g01151 Cla-Chr8:24302411 0 wgd
Cla11g01437 Cla-Chr11:27980311 Cla08g01151 Cla-Chr8:24302411 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01151 K18195 - csv:101215720 1244.95