Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01156 ATGTACGCACGCGCTCAACCGTTGACCATGGGCGACCAGATCGCCTCTGTCCCCGACTGCGGCGACAGCGGCGAGCCCTTGGATAATCGTCTCGTTCGATACGGAGCTCACTCTCTCGAAGATGGTGGTGGAGTAGGCGGCATGATCGAGGATCTCAACCCTGACGCCGTTTATGCTTCCGCCGGTGATGGTTCGGACTTGGCTGTTCAGCGCAACGATGGTTCAAGCCAGCTCACACTTTCATTCCGTGGTCAGGTTTATCTTTTCGATGCAGTCTCTCCTGAGAAGGTTCAAGCAGTATTGTTGTTGTTGGGTGGTTGCGAACTATCTTCTGGTCAGCAAAGCGTGGATTTGGTTAATCAAAATCAGAGGAATGCTGTGGACTTCCCTGGACGCAGTAGTCAACCCCAGAGGGCAGCCTCGTTAAATCGGTTTCGACAGAAAAGGAAGGAGCGATGTTATGATAAAAAAGTTAGATACAGTGTTCGTCAGGAGGTTGCTCTCAGGATGCAACGCAACAAAGGACAGTTTACTTCTTCCAAGAAGCCTGATGGTTCGTATAGTCATGGCAGTGTCTCGGAGTTAGGTCAAGATGAAAGTCCACCAGAAACTTCATGCACAAATTGTGGCATAAGTTCGATGGCAACCCCAATGATGCGGCGAGGACCATCTGGGCCTAGATCACTTTGCAATGCCTGTGGACTCTTTTGGGCAAACCGGGGAACTTTAAGGGATCTTTCAAAGAGAAGTCAAGACCATCCGGTGACCCCAGCCGAGCAGTGTGAAAGTGATGGTGGCAAGGACTTAGACTGCAGACATGATAAAAAAAAGGCCATTATGGCTGTTTCTGGCTTCATTCAATCAGGCCCTCGTTTTGTTAGGGCTTTCGAAAAGTTGATGGCGGCTGCAAATCCTCAGCCTTTGCAAGCGCGTCCCTTCCAGGAACATGTCCAAGTTTCCACAATGATGGGGGATGATGACGGTGAATATGAAGATGGTGGTGGTGGTGGTGGTGGCGGCGGCGGCGGCGGCGGCGGCGATGTTATGGATGATGTCGAAGAAGCTCATATGACTTCAGTGAGCGTAGCGAATCATGGGGGGTTGGTCATGGCGTCTAGAACTAGTGAACTTACGCTCTCTTTTGAGGGCGAGGTTTATGTGTTCCCCGCAGTTACTCCCGAAAAGGTACAAGCCGTGCTCTTGCTTCTTGGAGGGCGTGATGTGCCAACCGGTGTACCTACAATGGAAGTACCATACGATCATAATAACAGGGGTATGGTTGACACACCAAAGCGCTCCAACTTATCACGGAGAATAGCCTCCCTGGTTAGGTTTCGTGAAAAACGGAAAGAGAGATGTTTTGACAAGAAAATTAGGTACACTGTACGGAAAGAGGTTGCACAGAGGATGCACCGCAAGAATGGCCAATTTGCATCCTTAAAAGAAAGTTCAGGTGCTTCAAGTTGGGAGTCAGCACATAGTTGCCTCCAAGATGGTACTCGTTCAGAAACTGTTTTGCGGAAGTGTCAACATTGTGGTGTTAGTGAGAACAATACACCTGCAATGCGTCGTGGGCCTGCTGGACCAAGGACTTTATGTAATGCATGTGGCTTGATGTGGGCGAACAAGGGCACGTTGAGAGACCTCAGCAAGGGAGGGAGGAATGTGTCTCTGGATCATATGGAACCTGAAACCCCAATGGATGTCAAGCCCACAATCATGGAGGGAGAATTTTCGGGCATCCAGGATGAACATGGAACTCCTGAGGATCCTAGTAAAACCATGACTGAAGGCTCCAGTAATCCTTCCATTGACCCGGATGAGGAAGACATAAATGAAACCACTGGAGACCTTACAAATTCGTTGCGCATGCGAACTGTTAATCATTCAACAAATGACGATGAGCAGGAACCTCTTGTCGAACTTGCTAATCCTTCGGATACCGATATAGACATCCCCACTAACTTTGATTAG 1974 49.29 MYARAQPLTMGDQIASVPDCGDSGEPLDNRLVRYGAHSLEDGGGVGGMIEDLNPDAVYASAGDGSDLAVQRNDGSSQLTLSFRGQVYLFDAVSPEKVQAVLLLLGGCELSSGQQSVDLVNQNQRNAVDFPGRSSQPQRAASLNRFRQKRKERCYDKKVRYSVRQEVALRMQRNKGQFTSSKKPDGSYSHGSVSELGQDESPPETSCTNCGISSMATPMMRRGPSGPRSLCNACGLFWANRGTLRDLSKRSQDHPVTPAEQCESDGGKDLDCRHDKKKAIMAVSGFIQSGPRFVRAFEKLMAAANPQPLQARPFQEHVQVSTMMGDDDGEYEDGGGGGGGGGGGGGGDVMDDVEEAHMTSVSVANHGGLVMASRTSELTLSFEGEVYVFPAVTPEKVQAVLLLLGGRDVPTGVPTMEVPYDHNNRGMVDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYTVRKEVAQRMHRKNGQFASLKESSGASSWESAHSCLQDGTRSETVLRKCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRNVSLDHMEPETPMDVKPTIMEGEFSGIQDEHGTPEDPSKTMTEGSSNPSIDPDEEDINETTGDLTNSLRMRTVNHSTNDDEQEPLVELANPSDTDIDIPTNFD 657
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24385761 24408769 - ClCG08G011590.2 Cla08g01156 278811

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01156 657 ProSiteProfiles CCT domain profile. 138 180 IPR010402 GO:0005515
Cla08g01156 657 ProSiteProfiles Tify domain profile. 71 106 IPR010399 -
Cla08g01156 657 SMART tify_2 370 405 IPR010399 -
Cla08g01156 657 SMART tify_2 71 106 IPR010399 -
Cla08g01156 657 PANTHER GATA TRANSCRIPTION FACTOR 28 67 259 IPR045280 GO:0006355
Cla08g01156 657 CDD ZnF_GATA 205 252 IPR000679 GO:0006355|GO:0043565
Cla08g01156 657 MobiDBLite consensus disorder prediction 127 146 - -
Cla08g01156 657 ProSitePatterns GATA-type zinc finger domain. 509 536 IPR000679 GO:0006355|GO:0043565
Cla08g01156 657 PANTHER GATA TRANSCRIPTION FACTOR 28 300 657 IPR045280 GO:0006355
Cla08g01156 657 Pfam CCT motif 438 479 IPR010402 GO:0005515
Cla08g01156 657 Pfam CCT motif 138 180 IPR010402 GO:0005515
Cla08g01156 657 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 504 553 - -
Cla08g01156 657 MobiDBLite consensus disorder prediction 579 657 - -
Cla08g01156 657 MobiDBLite consensus disorder prediction 127 142 - -
Cla08g01156 657 MobiDBLite consensus disorder prediction 171 208 - -
Cla08g01156 657 CDD ZnF_GATA 508 552 IPR000679 GO:0006355|GO:0043565
Cla08g01156 657 ProSitePatterns GATA-type zinc finger domain. 206 233 IPR000679 GO:0006355|GO:0043565
Cla08g01156 657 PANTHER GATA TRANSCRIPTION FACTOR 28-LIKE ISOFORM X1 67 259 - -
Cla08g01156 657 MobiDBLite consensus disorder prediction 248 268 - -
Cla08g01156 657 PANTHER GATA TRANSCRIPTION FACTOR 28-LIKE ISOFORM X1 300 657 - -
Cla08g01156 657 Pfam tify domain 74 105 IPR010399 -
Cla08g01156 657 Pfam tify domain 373 404 IPR010399 -
Cla08g01156 657 ProSiteProfiles GATA-type zinc finger domain profile. 503 551 IPR000679 GO:0006355|GO:0043565
Cla08g01156 657 Gene3D - 501 559 IPR013088 GO:0006355|GO:0008270
Cla08g01156 657 Gene3D - 196 255 IPR013088 GO:0006355|GO:0008270
Cla08g01156 657 MobiDBLite consensus disorder prediction 324 346 - -
Cla08g01156 657 ProSiteProfiles GATA-type zinc finger domain profile. 200 259 IPR000679 GO:0006355|GO:0043565
Cla08g01156 657 ProSiteProfiles Tify domain profile. 370 405 IPR010399 -
Cla08g01156 657 Pfam GATA zinc finger 206 242 IPR000679 GO:0006355|GO:0043565
Cla08g01156 657 Pfam GATA zinc finger 509 545 IPR000679 GO:0006355|GO:0043565
Cla08g01156 657 ProSiteProfiles CCT domain profile. 438 480 IPR010402 GO:0005515
Cla08g01156 657 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 200 250 - -
Cla08g01156 657 SMART GATA_3 503 556 IPR000679 GO:0006355|GO:0043565
Cla08g01156 657 SMART GATA_3 200 253 IPR000679 GO:0006355|GO:0043565
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01156 - - - csv:101214596 638.262
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g01156 Cla-Chr8:24385761 Cla09g01585 Cla-Chr9:31623402 1.18E-63 dispersed
Cla08g01156 Cla-Chr8:24385761 Cla05g02146 Cla-Chr5:33065071 1.95E-06 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla09g00147 . 1 230 Tify Gene Family AT3G21175 56.1 1.2e-58 223.4
Cla08g01156 . 47 270 Tify Gene Family AT4G24470 58.3 8.8e-66 247.7
Cla09g01585 . 89 267 Tify Gene Family AT4G24470 59.7 3.7e-48 189.1
Cla09g00147 . 1 280 Tify Gene Family AT1G51600 57.0 1.2e-80 297.0
Cla09g01585 . 86 303 Tify Gene Family AT1G51600 54.4 6.9e-52 201.4
Cla08g01156 . 376 551 Tify Gene Family AT1G51600 59.0 7.6e-51 198.0
Cla08g01156 . 47 270 Tify Gene Family AT4G24470 58.3 8.8e-66 247.7
Cla09g01585 . 89 267 Tify Gene Family AT4G24470 59.7 3.7e-48 189.1
Cla09g00147 . 1 280 Tify Gene Family AT1G51600 57.0 1.2e-80 297.0
Cla09g01585 . 86 303 Tify Gene Family AT1G51600 54.4 6.9e-52 201.4
Cla08g01156 . 376 551 Tify Gene Family AT1G51600 59.0 7.6e-51 198.0
Cla09g00147 . 1 230 Tify Gene Family AT3G21175 56.1 1.2e-58 223.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003566 2 4 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 0 1 1 4 6 1 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61574 PF06203 CCT 3.00E-13 CL0281 Cla TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla08g01156 Cla_Chr08 FPKM 35.800377 41.811424 1.389036 1.504439 7.400654 9.178272 7.632622 7.069517 6.471602 6.639638