Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01156 ATGTACGCACGCGCTCAACCGTTGACCATGGGCGACCAGATCGCCTCTGTCCCCGACTGCGGCGACAGCGGCGAGCCCTTGGATAATCGTCTCGTTCGATACGGAGCTCACTCTCTCGAAGATGGTGGTGGAGTAGGCGGCATGATCGAGGATCTCAACCCTGACGCCGTTTATGCTTCCGCCGGTGATGGTTCGGACTTGGCTGTTCAGCGCAACGATGGTTCAAGCCAGCTCACACTTTCATTCCGTGGTCAGGTTTATCTTTTCGATGCAGTCTCTCCTGAGAAGGTTCAAGCAGTATTGTTGTTGTTGGGTGGTTGCGAACTATCTTCTGGTCAGCAAAGCGTGGATTTGGTTAATCAAAATCAGAGGAATGCTGTGGACTTCCCTGGACGCAGTAGTCAACCCCAGAGGGCAGCCTCGTTAAATCGGTTTCGACAGAAAAGGAAGGAGCGATGTTATGATAAAAAAGTTAGATACAGTGTTCGTCAGGAGGTTGCTCTCAGGATGCAACGCAACAAAGGACAGTTTACTTCTTCCAAGAAGCCTGATGGTTCGTATAGTCATGGCAGTGTCTCGGAGTTAGGTCAAGATGAAAGTCCACCAGAAACTTCATGCACAAATTGTGGCATAAGTTCGATGGCAACCCCAATGATGCGGCGAGGACCATCTGGGCCTAGATCACTTTGCAATGCCTGTGGACTCTTTTGGGCAAACCGGGGAACTTTAAGGGATCTTTCAAAGAGAAGTCAAGACCATCCGGTGACCCCAGCCGAGCAGTGTGAAAGTGATGGTGGCAAGGACTTAGACTGCAGACATGATAAAAAAAAGGCCATTATGGCTGTTTCTGGCTTCATTCAATCAGGCCCTCGTTTTGTTAGGGCTTTCGAAAAGTTGATGGCGGCTGCAAATCCTCAGCCTTTGCAAGCGCGTCCCTTCCAGGAACATGTCCAAGTTTCCACAATGATGGGGGATGATGACGGTGAATATGAAGATGGTGGTGGTGGTGGTGGTGGCGGCGGCGGCGGCGGCGGCGGCGATGTTATGGATGATGTCGAAGAAGCTCATATGACTTCAGTGAGCGTAGCGAATCATGGGGGGTTGGTCATGGCGTCTAGAACTAGTGAACTTACGCTCTCTTTTGAGGGCGAGGTTTATGTGTTCCCCGCAGTTACTCCCGAAAAGGTACAAGCCGTGCTCTTGCTTCTTGGAGGGCGTGATGTGCCAACCGGTGTACCTACAATGGAAGTACCATACGATCATAATAACAGGGGTATGGTTGACACACCAAAGCGCTCCAACTTATCACGGAGAATAGCCTCCCTGGTTAGGTTTCGTGAAAAACGGAAAGAGAGATGTTTTGACAAGAAAATTAGGTACACTGTACGGAAAGAGGTTGCACAGAGGATGCACCGCAAGAATGGCCAATTTGCATCCTTAAAAGAAAGTTCAGGTGCTTCAAGTTGGGAGTCAGCACATAGTTGCCTCCAAGATGGTACTCGTTCAGAAACTGTTTTGCGGAAGTGTCAACATTGTGGTGTTAGTGAGAACAATACACCTGCAATGCGTCGTGGGCCTGCTGGACCAAGGACTTTATGTAATGCATGTGGCTTGATGTGGGCGAACAAGGGCACGTTGAGAGACCTCAGCAAGGGAGGGAGGAATGTGTCTCTGGATCATATGGAACCTGAAACCCCAATGGATGTCAAGCCCACAATCATGGAGGGAGAATTTTCGGGCATCCAGGATGAACATGGAACTCCTGAGGATCCTAGTAAAACCATGACTGAAGGCTCCAGTAATCCTTCCATTGACCCGGATGAGGAAGACATAAATGAAACCACTGGAGACCTTACAAATTCGTTGCGCATGCGAACTGTTAATCATTCAACAAATGACGATGAGCAGGAACCTCTTGTCGAACTTGCTAATCCTTCGGATACCGATATAGACATCCCCACTAACTTTGATTAG 1974 49.29 MYARAQPLTMGDQIASVPDCGDSGEPLDNRLVRYGAHSLEDGGGVGGMIEDLNPDAVYASAGDGSDLAVQRNDGSSQLTLSFRGQVYLFDAVSPEKVQAVLLLLGGCELSSGQQSVDLVNQNQRNAVDFPGRSSQPQRAASLNRFRQKRKERCYDKKVRYSVRQEVALRMQRNKGQFTSSKKPDGSYSHGSVSELGQDESPPETSCTNCGISSMATPMMRRGPSGPRSLCNACGLFWANRGTLRDLSKRSQDHPVTPAEQCESDGGKDLDCRHDKKKAIMAVSGFIQSGPRFVRAFEKLMAAANPQPLQARPFQEHVQVSTMMGDDDGEYEDGGGGGGGGGGGGGGDVMDDVEEAHMTSVSVANHGGLVMASRTSELTLSFEGEVYVFPAVTPEKVQAVLLLLGGRDVPTGVPTMEVPYDHNNRGMVDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYTVRKEVAQRMHRKNGQFASLKESSGASSWESAHSCLQDGTRSETVLRKCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRNVSLDHMEPETPMDVKPTIMEGEFSGIQDEHGTPEDPSKTMTEGSSNPSIDPDEEDINETTGDLTNSLRMRTVNHSTNDDEQEPLVELANPSDTDIDIPTNFD 657
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24385761 24408769 - ClCG08G011590.2 Cla08g01156 278811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01156 657 ProSiteProfiles CCT domain profile. 138 180 IPR010402 GO:0005515
Cla08g01156 657 ProSiteProfiles Tify domain profile. 71 106 IPR010399 -
Cla08g01156 657 SMART tify_2 370 405 IPR010399 -
Cla08g01156 657 SMART tify_2 71 106 IPR010399 -
Cla08g01156 657 PANTHER GATA TRANSCRIPTION FACTOR 28 67 259 IPR045280 GO:0006355
Cla08g01156 657 CDD ZnF_GATA 205 252 IPR000679 GO:0006355|GO:0043565
Cla08g01156 657 MobiDBLite consensus disorder prediction 127 146 - -
Cla08g01156 657 ProSitePatterns GATA-type zinc finger domain. 509 536 IPR000679 GO:0006355|GO:0043565
Cla08g01156 657 PANTHER GATA TRANSCRIPTION FACTOR 28 300 657 IPR045280 GO:0006355
Cla08g01156 657 Pfam CCT motif 438 479 IPR010402 GO:0005515
Cla08g01156 657 Pfam CCT motif 138 180 IPR010402 GO:0005515
Cla08g01156 657 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 504 553 - -
Cla08g01156 657 MobiDBLite consensus disorder prediction 579 657 - -
Cla08g01156 657 MobiDBLite consensus disorder prediction 127 142 - -
Cla08g01156 657 MobiDBLite consensus disorder prediction 171 208 - -
Cla08g01156 657 CDD ZnF_GATA 508 552 IPR000679 GO:0006355|GO:0043565
Cla08g01156 657 ProSitePatterns GATA-type zinc finger domain. 206 233 IPR000679 GO:0006355|GO:0043565
Cla08g01156 657 PANTHER GATA TRANSCRIPTION FACTOR 28-LIKE ISOFORM X1 67 259 - -
Cla08g01156 657 MobiDBLite consensus disorder prediction 248 268 - -
Cla08g01156 657 PANTHER GATA TRANSCRIPTION FACTOR 28-LIKE ISOFORM X1 300 657 - -
Cla08g01156 657 Pfam tify domain 74 105 IPR010399 -
Cla08g01156 657 Pfam tify domain 373 404 IPR010399 -
Cla08g01156 657 ProSiteProfiles GATA-type zinc finger domain profile. 503 551 IPR000679 GO:0006355|GO:0043565
Cla08g01156 657 Gene3D - 501 559 IPR013088 GO:0006355|GO:0008270
Cla08g01156 657 Gene3D - 196 255 IPR013088 GO:0006355|GO:0008270
Cla08g01156 657 MobiDBLite consensus disorder prediction 324 346 - -
Cla08g01156 657 ProSiteProfiles GATA-type zinc finger domain profile. 200 259 IPR000679 GO:0006355|GO:0043565
Cla08g01156 657 ProSiteProfiles Tify domain profile. 370 405 IPR010399 -
Cla08g01156 657 Pfam GATA zinc finger 206 242 IPR000679 GO:0006355|GO:0043565
Cla08g01156 657 Pfam GATA zinc finger 509 545 IPR000679 GO:0006355|GO:0043565
Cla08g01156 657 ProSiteProfiles CCT domain profile. 438 480 IPR010402 GO:0005515
Cla08g01156 657 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 200 250 - -
Cla08g01156 657 SMART GATA_3 503 556 IPR000679 GO:0006355|GO:0043565
Cla08g01156 657 SMART GATA_3 200 253 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g01156 Cla-Chr8:24385761 Cla09g01585 Cla-Chr9:31623402 1.18E-63 dispersed
Cla08g01156 Cla-Chr8:24385761 Cla05g02146 Cla-Chr5:33065071 1.95E-06 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61574 PF06203 CCT 3.00E-13 CL0281 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01156 - - csv:101214596 638.262