Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla08g01156 | ATGTACGCACGCGCTCAACCGTTGACCATGGGCGACCAGATCGCCTCTGTCCCCGACTGCGGCGACAGCGGCGAGCCCTTGGATAATCGTCTCGTTCGATACGGAGCTCACTCTCTCGAAGATGGTGGTGGAGTAGGCGGCATGATCGAGGATCTCAACCCTGACGCCGTTTATGCTTCCGCCGGTGATGGTTCGGACTTGGCTGTTCAGCGCAACGATGGTTCAAGCCAGCTCACACTTTCATTCCGTGGTCAGGTTTATCTTTTCGATGCAGTCTCTCCTGAGAAGGTTCAAGCAGTATTGTTGTTGTTGGGTGGTTGCGAACTATCTTCTGGTCAGCAAAGCGTGGATTTGGTTAATCAAAATCAGAGGAATGCTGTGGACTTCCCTGGACGCAGTAGTCAACCCCAGAGGGCAGCCTCGTTAAATCGGTTTCGACAGAAAAGGAAGGAGCGATGTTATGATAAAAAAGTTAGATACAGTGTTCGTCAGGAGGTTGCTCTCAGGATGCAACGCAACAAAGGACAGTTTACTTCTTCCAAGAAGCCTGATGGTTCGTATAGTCATGGCAGTGTCTCGGAGTTAGGTCAAGATGAAAGTCCACCAGAAACTTCATGCACAAATTGTGGCATAAGTTCGATGGCAACCCCAATGATGCGGCGAGGACCATCTGGGCCTAGATCACTTTGCAATGCCTGTGGACTCTTTTGGGCAAACCGGGGAACTTTAAGGGATCTTTCAAAGAGAAGTCAAGACCATCCGGTGACCCCAGCCGAGCAGTGTGAAAGTGATGGTGGCAAGGACTTAGACTGCAGACATGATAAAAAAAAGGCCATTATGGCTGTTTCTGGCTTCATTCAATCAGGCCCTCGTTTTGTTAGGGCTTTCGAAAAGTTGATGGCGGCTGCAAATCCTCAGCCTTTGCAAGCGCGTCCCTTCCAGGAACATGTCCAAGTTTCCACAATGATGGGGGATGATGACGGTGAATATGAAGATGGTGGTGGTGGTGGTGGTGGCGGCGGCGGCGGCGGCGGCGGCGATGTTATGGATGATGTCGAAGAAGCTCATATGACTTCAGTGAGCGTAGCGAATCATGGGGGGTTGGTCATGGCGTCTAGAACTAGTGAACTTACGCTCTCTTTTGAGGGCGAGGTTTATGTGTTCCCCGCAGTTACTCCCGAAAAGGTACAAGCCGTGCTCTTGCTTCTTGGAGGGCGTGATGTGCCAACCGGTGTACCTACAATGGAAGTACCATACGATCATAATAACAGGGGTATGGTTGACACACCAAAGCGCTCCAACTTATCACGGAGAATAGCCTCCCTGGTTAGGTTTCGTGAAAAACGGAAAGAGAGATGTTTTGACAAGAAAATTAGGTACACTGTACGGAAAGAGGTTGCACAGAGGATGCACCGCAAGAATGGCCAATTTGCATCCTTAAAAGAAAGTTCAGGTGCTTCAAGTTGGGAGTCAGCACATAGTTGCCTCCAAGATGGTACTCGTTCAGAAACTGTTTTGCGGAAGTGTCAACATTGTGGTGTTAGTGAGAACAATACACCTGCAATGCGTCGTGGGCCTGCTGGACCAAGGACTTTATGTAATGCATGTGGCTTGATGTGGGCGAACAAGGGCACGTTGAGAGACCTCAGCAAGGGAGGGAGGAATGTGTCTCTGGATCATATGGAACCTGAAACCCCAATGGATGTCAAGCCCACAATCATGGAGGGAGAATTTTCGGGCATCCAGGATGAACATGGAACTCCTGAGGATCCTAGTAAAACCATGACTGAAGGCTCCAGTAATCCTTCCATTGACCCGGATGAGGAAGACATAAATGAAACCACTGGAGACCTTACAAATTCGTTGCGCATGCGAACTGTTAATCATTCAACAAATGACGATGAGCAGGAACCTCTTGTCGAACTTGCTAATCCTTCGGATACCGATATAGACATCCCCACTAACTTTGATTAG | 1974 | 49.29 | MYARAQPLTMGDQIASVPDCGDSGEPLDNRLVRYGAHSLEDGGGVGGMIEDLNPDAVYASAGDGSDLAVQRNDGSSQLTLSFRGQVYLFDAVSPEKVQAVLLLLGGCELSSGQQSVDLVNQNQRNAVDFPGRSSQPQRAASLNRFRQKRKERCYDKKVRYSVRQEVALRMQRNKGQFTSSKKPDGSYSHGSVSELGQDESPPETSCTNCGISSMATPMMRRGPSGPRSLCNACGLFWANRGTLRDLSKRSQDHPVTPAEQCESDGGKDLDCRHDKKKAIMAVSGFIQSGPRFVRAFEKLMAAANPQPLQARPFQEHVQVSTMMGDDDGEYEDGGGGGGGGGGGGGGDVMDDVEEAHMTSVSVANHGGLVMASRTSELTLSFEGEVYVFPAVTPEKVQAVLLLLGGRDVPTGVPTMEVPYDHNNRGMVDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYTVRKEVAQRMHRKNGQFASLKESSGASSWESAHSCLQDGTRSETVLRKCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRNVSLDHMEPETPMDVKPTIMEGEFSGIQDEHGTPEDPSKTMTEGSSNPSIDPDEEDINETTGDLTNSLRMRTVNHSTNDDEQEPLVELANPSDTDIDIPTNFD | 657 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 24385761 | 24408769 | - | ClCG08G011590.2 | Cla08g01156 | 278811 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla08g01156 | 657 | ProSiteProfiles | CCT domain profile. | 138 | 180 | IPR010402 | GO:0005515 | |
Cla08g01156 | 657 | ProSiteProfiles | Tify domain profile. | 71 | 106 | IPR010399 | - | |
Cla08g01156 | 657 | SMART | tify_2 | 370 | 405 | IPR010399 | - | |
Cla08g01156 | 657 | SMART | tify_2 | 71 | 106 | IPR010399 | - | |
Cla08g01156 | 657 | PANTHER | GATA TRANSCRIPTION FACTOR 28 | 67 | 259 | IPR045280 | GO:0006355 | |
Cla08g01156 | 657 | CDD | ZnF_GATA | 205 | 252 | IPR000679 | GO:0006355|GO:0043565 | |
Cla08g01156 | 657 | MobiDBLite | consensus disorder prediction | 127 | 146 | - | - | |
Cla08g01156 | 657 | ProSitePatterns | GATA-type zinc finger domain. | 509 | 536 | IPR000679 | GO:0006355|GO:0043565 | |
Cla08g01156 | 657 | PANTHER | GATA TRANSCRIPTION FACTOR 28 | 300 | 657 | IPR045280 | GO:0006355 | |
Cla08g01156 | 657 | Pfam | CCT motif | 438 | 479 | IPR010402 | GO:0005515 | |
Cla08g01156 | 657 | Pfam | CCT motif | 138 | 180 | IPR010402 | GO:0005515 | |
Cla08g01156 | 657 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 504 | 553 | - | - | |
Cla08g01156 | 657 | MobiDBLite | consensus disorder prediction | 579 | 657 | - | - | |
Cla08g01156 | 657 | MobiDBLite | consensus disorder prediction | 127 | 142 | - | - | |
Cla08g01156 | 657 | MobiDBLite | consensus disorder prediction | 171 | 208 | - | - | |
Cla08g01156 | 657 | CDD | ZnF_GATA | 508 | 552 | IPR000679 | GO:0006355|GO:0043565 | |
Cla08g01156 | 657 | ProSitePatterns | GATA-type zinc finger domain. | 206 | 233 | IPR000679 | GO:0006355|GO:0043565 | |
Cla08g01156 | 657 | PANTHER | GATA TRANSCRIPTION FACTOR 28-LIKE ISOFORM X1 | 67 | 259 | - | - | |
Cla08g01156 | 657 | MobiDBLite | consensus disorder prediction | 248 | 268 | - | - | |
Cla08g01156 | 657 | PANTHER | GATA TRANSCRIPTION FACTOR 28-LIKE ISOFORM X1 | 300 | 657 | - | - | |
Cla08g01156 | 657 | Pfam | tify domain | 74 | 105 | IPR010399 | - | |
Cla08g01156 | 657 | Pfam | tify domain | 373 | 404 | IPR010399 | - | |
Cla08g01156 | 657 | ProSiteProfiles | GATA-type zinc finger domain profile. | 503 | 551 | IPR000679 | GO:0006355|GO:0043565 | |
Cla08g01156 | 657 | Gene3D | - | 501 | 559 | IPR013088 | GO:0006355|GO:0008270 | |
Cla08g01156 | 657 | Gene3D | - | 196 | 255 | IPR013088 | GO:0006355|GO:0008270 | |
Cla08g01156 | 657 | MobiDBLite | consensus disorder prediction | 324 | 346 | - | - | |
Cla08g01156 | 657 | ProSiteProfiles | GATA-type zinc finger domain profile. | 200 | 259 | IPR000679 | GO:0006355|GO:0043565 | |
Cla08g01156 | 657 | ProSiteProfiles | Tify domain profile. | 370 | 405 | IPR010399 | - | |
Cla08g01156 | 657 | Pfam | GATA zinc finger | 206 | 242 | IPR000679 | GO:0006355|GO:0043565 | |
Cla08g01156 | 657 | Pfam | GATA zinc finger | 509 | 545 | IPR000679 | GO:0006355|GO:0043565 | |
Cla08g01156 | 657 | ProSiteProfiles | CCT domain profile. | 438 | 480 | IPR010402 | GO:0005515 | |
Cla08g01156 | 657 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 200 | 250 | - | - | |
Cla08g01156 | 657 | SMART | GATA_3 | 503 | 556 | IPR000679 | GO:0006355|GO:0043565 | |
Cla08g01156 | 657 | SMART | GATA_3 | 200 | 253 | IPR000679 | GO:0006355|GO:0043565 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla08g01156 | Cla-Chr8:24385761 | Cla09g01585 | Cla-Chr9:31623402 | 1.18E-63 | dispersed | |
Cla08g01156 | Cla-Chr8:24385761 | Cla05g02146 | Cla-Chr5:33065071 | 1.95E-06 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
61574 | PF06203 | CCT | 3.00E-13 | CL0281 | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla08g01156 | - | - | csv:101214596 | 638.262 |