Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01164 ATGGTTCATCCTGGTTCTACCCAATTTTCACATAAATTGGGGATTCAAAGTGTTCATGGATGCAATAAGTTACATATTAGTATCAAGGGAAAGACTCGTGTACATCTTGTTACTATCGTTCCTTCATCACATGGTCTGAGGCATGATCCTGTAAGTCTTCAGCTCTTACGGAGTGTAAGTCGACCAATGTATCCTGTGTCTTCCAGAGCAAATGTTTTTGTGTGTCGATCTGTTCTGGAATCAGGTGGTGGAGCTGGGACTGCCGTTCTAAACTCTGCAGCTGTAGTTTTGACAAGATCTTATGATGCTTTACGAGGCAGTCCTCTGTTACTTAAATTAATTCCAGCAGCTTGTGTCATTGCTTTTGCTGCTTGGGGTGTTGGACCTCTTATGCGTTTGGGGAGGATACTATTTCTTCATGAGCCGGATGGCAGTTGGAAGAAAAGTAGTACATACTATGTTACGACTTCTTATGTTCAGCCTTTACTGCTATGGACTGGAGCTACACTGATCTGCAGGGCATTGGATCCAGTAGTTTTACCTTCAGTAGCCAGTCAGGCTGTCAAACAACGACTTCTGAATTTTGTTAGATCTTTGTCTACTGTTCTCGCATTTGCCTATTGTATATCCAGCTTGATTCAACAAGTACAAAAATTCGCTTCTGAATCAAATGACTCAAGTGATGCAAGAAATATGGGCTTTGATTTTGCTGGGAAAGCTGTTTACACTGCAGTCTGGATTGCTGCCCTTTCATTGTTCATGGAGTTGCTCGGTTTTTCTACCCAGAAGTGGCTAACAGCTGGGGGTCTCGGAACCGTATTGCTTACCCTTGCTGGTCGTGAGATATTTACTAACTTCCTTTCAAGTGTAATGATTCATGCAACACGACCATTTGTCGTAAATGAATGGATTCAAACAAAGATTGATGGATATGAAGTCTCAGGAACGGTTGAGCATGTTGGTTGGTGGTCGCCAACCATCATCCGAGGCGATGATCGTGAAGCAGTCCATATTCCAAATCACAAATTCACGGTTAGTATTGTGAGGAATCTTACCCAAAAGACTCATTGGCGTATCAAGACTCATCTTGCCATCAGCCACTTAGATGTTAATAAGATCAATTATATTGTAGCTGATATGCGCAAAGTTCTGTCCAAGAATCCTCAAGTTGAACAGCAAAGGTTACACCGCAGAATTTTTTTGGATAACGTCAATCCTGAAAACCAGGCTCTTATGATCATGGTTTCTTGCTTTGTGAAAACTTCTCGTTTTGAAGAATACCTATGTGTCAAGGAGGCAATTCTCTTGGATCTCCTCAGGGTTATCAGCCACCATAGGGCCCGCCTCGCCACCCCCATTCGCACTGTGCAGAAAATATATGGCGAAGCTGATTTGGAGAATGTACCATTTTCTGAGACCATGTATTCTCGTTCCAACCGTCCTCTGCTTCTTATTGAGCCATCTTATAAAGTCAATGGTGATGATAAAACCAAAGTCTCTAGTCGTCCCACTCGTTCATCTAACGAAGAAAAGGAAGCGAAACAAGAGGCAGTCTCAATGTCAGGGACAAAAGCCCCCGACACAGCTGGATCAACATCAAATCTAGCAAGCAATGAGATAAAAGGAGAAAAGAAAGATGTCATAGGAATGAATTCCAAGGACAATATGCCACGAGGGACTCCGCCCAAAAGATCTCCCTCAGCTTCCAGTCCTAGCAGTGAGAAAGCTGATATTCCTTCCTCAAGCTCACAGAATAAGCAAGACGGCGAGAAGACCTCTGCATCGCCATCAGTGGCGAGGGCACCATTGGAGGAGAATATTGTCCTGGGAGTTGCGTTAGAAGGCTCGAAAAGAACTCTTCCAATTGATGAAGATTTGGATTCAAAAGAAATTTCGACACAGAGGAATGGGAGTGAGTTTCCCGGCAACAGTAAGGATATGAAAGATGGCCAAATGCCTGCAGTTCCAGGTGCGACAAAAAATGATTGA 1989 43.34 MVHPGSTQFSHKLGIQSVHGCNKLHISIKGKTRVHLVTIVPSSHGLRHDPVSLQLLRSVSRPMYPVSSRANVFVCRSVLESGGGAGTAVLNSAAVVLTRSYDALRGSPLLLKLIPAACVIAFAAWGVGPLMRLGRILFLHEPDGSWKKSSTYYVTTSYVQPLLLWTGATLICRALDPVVLPSVASQAVKQRLLNFVRSLSTVLAFAYCISSLIQQVQKFASESNDSSDARNMGFDFAGKAVYTAVWIAALSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATRPFVVNEWIQTKIDGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVSIVRNLTQKTHWRIKTHLAISHLDVNKINYIVADMRKVLSKNPQVEQQRLHRRIFLDNVNPENQALMIMVSCFVKTSRFEEYLCVKEAILLDLLRVISHHRARLATPIRTVQKIYGEADLENVPFSETMYSRSNRPLLLIEPSYKVNGDDKTKVSSRPTRSSNEEKEAKQEAVSMSGTKAPDTAGSTSNLASNEIKGEKKDVIGMNSKDNMPRGTPPKRSPSASSPSSEKADIPSSSSQNKQDGEKTSASPSVARAPLEENIVLGVALEGSKRTLPIDEDLDSKEISTQRNGSEFPGNSKDMKDGQMPAVPGATKND 662
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24475189 24480802 + ClCG08G011680.1 Cla08g01164 278819

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01164 662 Gene3D - 194 296 - -
Cla08g01164 662 MobiDBLite consensus disorder prediction 492 662 - -
Cla08g01164 662 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 572 654 IPR045042 -
Cla08g01164 662 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 1 556 IPR045042 -
Cla08g01164 662 SUPERFAMILY Sm-like ribonucleoproteins 282 352 IPR010920 -
Cla08g01164 662 MobiDBLite consensus disorder prediction 618 632 - -
Cla08g01164 662 Gene3D - 298 353 IPR023408 -
Cla08g01164 662 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 2, CHLOROPLASTIC 572 654 - -
Cla08g01164 662 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 2, CHLOROPLASTIC 1 556 - -
Cla08g01164 662 Pfam Mechanosensitive ion channel 239 446 IPR006685 GO:0016020|GO:0055085
Cla08g01164 662 MobiDBLite consensus disorder prediction 521 538 - -
Cla08g01164 662 MobiDBLite consensus disorder prediction 562 594 - -
Cla08g01164 662 MobiDBLite consensus disorder prediction 492 517 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01164 K22047 MSL1_2_3; mechanosensitive ion channel protein 1/2/3 - csv:101213477 1201.81
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g01164 Cla-Chr8:24475189 Cla10g00731 Cla-Chr10:11724317 0 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla05g00153 . 134 527 Mechanosensitive Ion Channel Family AT4G00290 66.5 6.7e-153 537.7
Cla08g01164 . 10 651 Mechanosensitive Ion Channel Family AT5G10490 58.5 1.3e-196 683.3
Cla10g00731 . 116 789 Mechanosensitive Ion Channel Family AT5G10490 55.4 4.9e-191 664.8
Cla08g01164 . 10 631 Mechanosensitive Ion Channel Family AT1G58200 58.0 2.9e-199 692.2
Cla10g00731 . 104 566 Mechanosensitive Ion Channel Family AT1G58200 65.0 2.5e-171 599.4
Cla02g01085 . 43 928 Mechanosensitive Ion Channel Family AT1G53470 54.8 3.2e-259 891.7
Cla02g00401 . 91 947 Mechanosensitive Ion Channel Family AT1G53470 51.2 2.4e-238 822.4
Cla02g01085 . 43 926 Mechanosensitive Ion Channel Family AT3G14810 53.3 1.1e-245 846.7
Cla02g01085 . 47 928 Mechanosensitive Ion Channel Family AT1G78610 58.4 1.2e-279 959.5
Cla02g00401 . 59 952 Mechanosensitive Ion Channel Family AT1G78610 55.8 1.1e-269 926.4
Cla02g01085 . 226 928 Mechanosensitive Ion Channel Family AT2G17000 61.6 4.3e-237 818.1
Cla02g00401 . 266 934 Mechanosensitive Ion Channel Family AT2G17000 58.7 1.1e-221 766.9
Cla02g01085 . 1 675 Mechanosensitive Ion Channel Family AT2G17010 50.3 4.3e-163 572.0
Cla05g01622 . 62 723 Mechanosensitive Ion Channel Family AT5G12080 57.8 1.7e-200 696.4
Cla03g01465 . 110 822 Mechanosensitive Ion Channel Family AT5G12080 52.2 2.7e-195 679.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001552 2 6 1 1 1 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 2 2 3 2 2 2 6 2 2 71
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla08g01164 Cla_Chr08 FPKM 0.0 0.0 0.0 0.0 16.704073 18.644186 13.291079 0.0 0.0 0.0