Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla08g01165 | ATGGCGAGGGAGAAAATCAAGATAAAGAAGATTGATAACCTAACGGCGAGACAGGTGACATTCTCTAAGCGAAGGAGAGGGCTTATCAAGAAGGCGGAGGAGCTATCGGTGCTCTGCGACGCCGAAGTAGCGCTGCTCATCTTCTCCGCCACCGGAAAGTTCTTCGAATATTCCAACTCCAGTGTTAAGGATGTTATAGCTAGATATAATTTGCACTCTAGTAATCTTGGAAAGTTGGAATATCCATCCCTTGAGCTGCAGCTTGAAAATGAAAATAGCAATCACGTCCGATTGAACAAGGAAGTTGCAGATATGAGCCAACAACTTAGGCAGATGAGGGGAGAAGATCTTCAAGGATTGAACTTAGAAGATCTGAAGCAATTGGAAAGATTGCTTGAAGTTGGTCTCACACGAGTTCTTCAAACCAAGGAAAAGAAGATTATGAGTGAAATTAGTGCGCTTGAGCTTAAGGGAGCGAGGCTGATGGAAGAAAACAAGATGCTTAGACAGCAGATGTTAAGGTTGTCGAATGAAAGAACGCCAGTGCTCGTGGATTCCGACGTTCATGTGGCGGCGGAAGAAGGGGTTTCGTCGGAATCCGCCGCCAATGTCTGCAGCTGCAACAGCGGCCCTCCTGCCGACGACGACAGCTCCGACACTTCCCTCAAATTAGGCAAAGGCGTGAGGGAGCATCCAGCTGCTCATTGGTTCCATTTTGAGCAACCCAAGTGGGCCAAAAGCTTTGACACAAATCTGTGTTTGGTAAAACTCTGGCTTCTCCTCCCTGTTCATCGGAGCTTGCGCTGCGCTCTGATTTACGAATGTCAACACACTGAGTTCCTTTTGACTCGTTTTCAACTCACCGATCTTCCCTTCATCCCTCTCTTCGCCATGAAGAACGCCCCCGTCAAAGGCCTTGAAGTTTTCGATTTCACCGAAGAAGACGAACTTCCTGAATTGATCTCCGAGAAGCGCCTCAGCAAATTTAAAAACCCTAATCTCGAATCTAACGCTGTTTTGAAGTATGAATTTCTCGAATGTGGTAATTTAACCGTGATCAATGGATTCATTGTTGAAGGGAAGGAGATTGAAAATCCACACATGGATGTTGATTTGGATGAATGTAATCGTGGTTGTGACAATGGTATTTCACATAATCCTTTGGGCACAACTAAAGAGCAACAAATCATGGAAGAAGAGAAATATCAATTGGATGCCAATGCAAAATCAGAAGTGAAATGCCATTTGCAAGATATGATCGTGCAAGTAGATAATCATGTGACACAAAGCCTTTGCTCTCAACTTGGGAAAATTGGATCTAGCTCTCAAAGTCCTACCCAGGGGTTAACTTGCACTCTTCCTGAGTTTACTGCTGAAAGTGAGCAAGTTGATGCACTGTCAGATCCTAATGGAAGCATAAAAGGGAGTTCTCCAGTGAGCCCTCCTTCAGAAACTGTAGAGGATGGTGTTTTGTTGAACGGGAAGTCTTCAGATAATTGCTCATCTGACAATGAAAAGGATGATCTTAGTGACGAGGTTGTCCTTTATCCCGATTATATTGTATGTGGAGATTTTTACTGTGCCAGTCCCTCCTTAACCTTTTCACATAATGGCATCAAAATTAATGGTTTTGCTGATTATGGAAGCAATGAGTACCTTAACCTTGAATGGAGAGTCGACGATGTCATTCATATTGAGTGCCAGTGCTTTCAAAGGGTTGAATATGTGATGATCAAGCTCCATGTTATCTCAAAAGATGCTGGTGAATGTGACAATGCGTGTGACAGTTCTGGCATTAAGGAAGTAAAGATTGTTCTTGTTGATTCTTACTGGTCTGAGAAACAACAAAAAATCAGATCTTTGGATTCCAGATACATGGCTATTTGGAATATGTCTCTCGATGTGGGAATAGGATCCGATGATGATGATTTAAGTGGGCAGAGACACTATTTTCCCAACTTTGATGAGCCTTTTGAAGAAGTTGTCTATCCCAAAGGAGATCCAGATGCTGTTTCCATTAGTAAGAGGGATGTTGACTTGCTGCAACCAGAGACGTTTGTCAATGACACAATCATTGACTTTTACATCCAGTATTTGAAGAGCCAGATAGATCCCAAGGAGAAGCATAGATTTCACTTCTTCAATAGTTTTTTCTTTAGGAAGCTGGCAGACCTTGATAAAGATCCATCAAGTGCTTCAGATGGCAGAGCTGCCTTTCTACGTGTTCGGAAATGGACACGGAAAGTGGATTTATTTGACAAGGATTATATCTTCATTCCTATAAACTTCAATCTTCATTGGAGCTTAATGGTCATATGCCACCCTGGCGAAGTGGCTAGATATAGTGATGAAGACCTGATGAAGTCAATGAAACTTCCGCAGCAGGAAAATTCATTTGATTGCGGATTGTTCTTGCTCCACTATCTAGAACTTTTTCTGGCAGAAGCTCCTCTTGATTTTAGCCCGTTCAAAATCTCCAAGCTTTCAAAATTTCTTAATGTGGATTGGTTCCCACCTGCTGAGGCCTACCTCAAGCGAACTTTAATACAGAGATTAATTTTCGAAATCCTTGATAACCGATCTCGAGAAATGTCCGCAGCTGCTTGCAGTGATGAACTCTTGTCTAAATTTCCATCCAATAATGAGGATGAAACTGGTCTGGAGCTTCTTCCCGAAAGAGGAAGCCCAGCCGTGGCACGCAATCACAATTTGCCAAGCTCACAAGCTGTTGATGGGATTGAAATTACTCTATTATCTGAATCTTCCAGTAGACACAACCACTTCATTGACGGTTCTGGCTTGGTTGTCAGAGAATTATTTGAACCAGGCGCCTCTAATGGACCGTTACTTGGACACTACCAATCTTTTGGTCAAACATCATCGTATTTTGATTCAAATGGTACTGACACAGATGCAGAAACTGGAGACCGTTTCATGTACTTACCTCCACAACAGGATGGTTTGCAGCCAATTGATGCAATGACATCTCAAGCTTGTCGTTTTCCGTGTTCATCGAGAGGCCTTGAATCGGACCCTGCTTTTGACTTATGCATGTCTATTCAACAAGAGCAAGGCGGGGGCATTGCCTCGTCCCCGACAGATGACTTGGAAGACGTGGGAATCATTGAACATTCCAATGTTAGGGAAGCAAGTCCTGGTAACACAGAAGAAAGGAACGGAAAAGGGCCTCTACCGATCGAGAAGGAGAACCTGGAACCTGTAGCAGAATGCCCTACTTCTGCTGCTACCACGAAGAAAGATTTTGATGCCATTGTCTTCTCTCAAGATGACACTAACGAGGAAAATAACGGATCTGATAATCCCATGTGTAAAGAGACTCTCGTTGCACTGCCGCATCTAGATAAAGATATAACAACCAAAACAGACGTCGAACATGATGATGTGCTGGTGGTTGCTTCGGTTACTGAGGTGGACTTAGACGAGCAACCCCCTGCCAAGAAACCAAGGCGTTCGTCATACCACGAAGAAGCGAGTAACAACGGTGTCAGAGAAGGTTTGTTGGATGATGCAGAAAAACGGAAAAAACTGTTATTTTGGCTTTCCTCTCAGTCCCAACTCCGAATCTTCTTTGCCTTCAAAATCCAGTGTCCAATTCAAGCTGTGATCTCCAACAAACCAACAATGGAGCTTCACTACTACACTCATCGCAGCCCATCCCACAGAGCGGCTCTTGCTGGTGTTTTTCTTCTTCTCTTTCCTCTTTTTTATCCCAATCTCTTCCATCCCTTGGGTCGCGCTTCGCCTTCCTTGTTCTCTGAATGGATTTCTCCAAAACCGAGGCACCCGATTTTGCTACACAATGGCTCCTTCCTCATATACACGCATCTGATACCATGCAGTATCACCAAGAAAATCTCAAGGTTACATTCAAGTGTTCTTAGATGGAGGATTGAATCAGCAAAGAATGGGGTTGCCGTTGCCCGAATACTAAATGCAACATTGGTCATACCTCATCTTGAAGTTAACGCTGTTTGGAAGGATTCCAGTTCGTTTGGAGAAATTTTTGATGTGGATCACTTCATTAATGTCCTGCGTGATGATATATCAATAGTCAAAGAGCTGCCTGCTGAATACTCCTGGAGCACAAGGGAATACTATGCTACTGGAATCCGTAATACTAGAATTAAAACAGCTCCCACTCAAGCTTCTGCAAACTGGTACTTGGAAAATGTCTTGCCCGTATTGCAAAGCAATGGGATTGCTGCTATTGCTCCATTCTCTCACCGTCTGTCTTTCAACGACTTGCCTACTGAGATTCAGCATTTGCGTTGTAAGGTCAATTTCAAGGCATTAGCATTTGTTCGTGACATCACTAAATTAGGAGATACCATTGTCAACCGCCTTCGTTACTCTTCAAATCAAAAGGGAATGGAAGGCGCTGAGAATCTGCTAGAGGATGAGACAAGAAAATTGGAAGGTGGGAAATTTGTTGTATTGCATCTCCGATTCGATAAGGGAAGGGTTCCTAACTCACAGTTCACTGATGAAGAGTTGAGATATCAGGGACGTTGCCCCTTGACTCCTGAAGAGATAGGATTGCTGCTAGCTGCTCTGGGGTTTAGCAATAGTACACGTGTCTATCTTGCTATACACAAGGTTTATGGTGGGGAAGCAAGAGTCTCAACTTTGCGCAAAATATTCCCGCTCCTGGAAGATAAGAAGAGCCTTACCTCTCCCTTGGAACGTGCTCGTGTAGCAGGCAAAGCATCATTATCAGCTGCAGTTGATTATTATGTGAGCATGCACAGCGACATCTTCATTTCTGCCTCGCCTGGAAACATGCACAACGCTCTGGTGGGACATCGGGCATACTTGAACATGAAAACTATAAGGCCAAACATGGTACTGTTGGGTCAGCTGTTCCTCAATAAGAGCATGGAATGGTCAGAATTCAGGAAGGCTGTTCTCGCTGGACATAAAAATAGACAAGGGCAGATCAGGTTAAGGAAAGAGAAGCAATCCATATACACTTATCCTGCTCCTGATTGCATGTGCGCTAACCTTATCATTACTCAAATCTACTCATATTATTACAGCTTTGGCTTTCTCTTAAGCTCTGCATTTCATTTTCGCATCGCTTCAAAAATCAGGAGAATAATTGGGAGAAGGCAAACCCTCGGCCTCGAGTTGACTACTCATCAATCATTTTTTGTCGCACCTGGAACTGCAGGCATTTGGCCATCTTTCATATCCTTACTGTTGCCGGGAAACTCACTCCCATTCCTCTGTGTCGAAATTTCTTTTGAATCCAAATCTTCATCAATTGGAAGAGTTCTTTTCGAGCCTTCTAACGCAACTCCCAGGACAATATTCTCCTCCAATGGTGCCCTCGCCACTGATGGCGATGCAGAGGTCTTCTCGCCGTCTTGCTTATTCTGTGAGCTTGAGGAAGGAATATCAGCTTTCTCACTGCTAGGACTGGAAGCTGAGGGAGATCTTTTGGGCGGAGTCCCTCGTGGCATATTGTCCTTGGAATTCATTCCTATGACATCTTTCTTTTCTCCTTTTATCTCATTGCTTGCTAGATTTGATGTTGATCCAGCTGTGTCGGGGGCTTTTGTCCCTGACATTGAGACTGCCTCTTGTTTCGCTTCCTTTTCTTCGTTAGATGAACGAGTGGGACGACTAGAGACTTTG | 5658 | 43.85 | MAREKIKIKKIDNLTARQVTFSKRRRGLIKKAEELSVLCDAEVALLIFSATGKFFEYSNSSVKDVIARYNLHSSNLGKLEYPSLELQLENENSNHVRLNKEVADMSQQLRQMRGEDLQGLNLEDLKQLERLLEVGLTRVLQTKEKKIMSEISALELKGARLMEENKMLRQQMLRLSNERTPVLVDSDVHVAAEEGVSSESAANVCSCNSGPPADDDSSDTSLKLGKGVREHPAAHWFHFEQPKWAKSFDTNLCLVKLWLLLPVHRSLRCALIYECQHTEFLLTRFQLTDLPFIPLFAMKNAPVKGLEVFDFTEEDELPELISEKRLSKFKNPNLESNAVLKYEFLECGNLTVINGFIVEGKEIENPHMDVDLDECNRGCDNGISHNPLGTTKEQQIMEEEKYQLDANAKSEVKCHLQDMIVQVDNHVTQSLCSQLGKIGSSSQSPTQGLTCTLPEFTAESEQVDALSDPNGSIKGSSPVSPPSETVEDGVLLNGKSSDNCSSDNEKDDLSDEVVLYPDYIVCGDFYCASPSLTFSHNGIKINGFADYGSNEYLNLEWRVDDVIHIECQCFQRVEYVMIKLHVISKDAGECDNACDSSGIKEVKIVLVDSYWSEKQQKIRSLDSRYMAIWNMSLDVGIGSDDDDLSGQRHYFPNFDEPFEEVVYPKGDPDAVSISKRDVDLLQPETFVNDTIIDFYIQYLKSQIDPKEKHRFHFFNSFFFRKLADLDKDPSSASDGRAAFLRVRKWTRKVDLFDKDYIFIPINFNLHWSLMVICHPGEVARYSDEDLMKSMKLPQQENSFDCGLFLLHYLELFLAEAPLDFSPFKISKLSKFLNVDWFPPAEAYLKRTLIQRLIFEILDNRSREMSAAACSDELLSKFPSNNEDETGLELLPERGSPAVARNHNLPSSQAVDGIEITLLSESSSRHNHFIDGSGLVVRELFEPGASNGPLLGHYQSFGQTSSYFDSNGTDTDAETGDRFMYLPPQQDGLQPIDAMTSQACRFPCSSRGLESDPAFDLCMSIQQEQGGGIASSPTDDLEDVGIIEHSNVREASPGNTEERNGKGPLPIEKENLEPVAECPTSAATTKKDFDAIVFSQDDTNEENNGSDNPMCKETLVALPHLDKDITTKTDVEHDDVLVVASVTEVDLDEQPPAKKPRRSSYHEEASNNGVREGLLDDAEKRKKLLFWLSSQSQLRIFFAFKIQCPIQAVISNKPTMELHYYTHRSPSHRAALAGVFLLLFPLFYPNLFHPLGRASPSLFSEWISPKPRHPILLHNGSFLIYTHLIPCSITKKISRLHSSVLRWRIESAKNGVAVARILNATLVIPHLEVNAVWKDSSSFGEIFDVDHFINVLRDDISIVKELPAEYSWSTREYYATGIRNTRIKTAPTQASANWYLENVLPVLQSNGIAAIAPFSHRLSFNDLPTEIQHLRCKVNFKALAFVRDITKLGDTIVNRLRYSSNQKGMEGAENLLEDETRKLEGGKFVVLHLRFDKGRVPNSQFTDEELRYQGRCPLTPEEIGLLLAALGFSNSTRVYLAIHKVYGGEARVSTLRKIFPLLEDKKSLTSPLERARVAGKASLSAAVDYYVSMHSDIFISASPGNMHNALVGHRAYLNMKTIRPNMVLLGQLFLNKSMEWSEFRKAVLAGHKNRQGQIRLRKEKQSIYTYPAPDCMCANLIITQIYSYYYSFGFLLSSAFHFRIASKIRRIIGRRQTLGLELTTHQSFFVAPGTAGIWPSFISLLLPGNSLPFLCVEISFESKSSSIGRVLFEPSNATPRTIFSSNGALATDGDAEVFSPSCLFCELEEGISAFSLLGLEAEGDLLGGVPRGILSLEFIPMTSFFSPFISLLARFDVDPAVSGAFVPDIETASCFASFSSLDERVGRLETL | 1886 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 24480113 | 24511431 | - | ClCG08G011690.1 | Cla08g01165 | 278820 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla08g01165 | 1886 | MobiDBLite | consensus disorder prediction | 1146 | 1167 | - | - | |
Cla08g01165 | 1886 | PANTHER | UBIQUITIN-LIKE-SPECIFIC PROTEASE 2B-RELATED | 305 | 793 | - | - | |
Cla08g01165 | 1886 | MobiDBLite | consensus disorder prediction | 202 | 221 | - | - | |
Cla08g01165 | 1886 | MobiDBLite | consensus disorder prediction | 202 | 216 | - | - | |
Cla08g01165 | 1886 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 | |
Cla08g01165 | 1886 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677|GO:0046983 | |
Cla08g01165 | 1886 | SUPERFAMILY | Cysteine proteinases | 663 | 855 | IPR038765 | - | |
Cla08g01165 | 1886 | PANTHER | UBIQUITIN-LIKE-SPECIFIC PROTEASE 2B-RELATED | 305 | 793 | - | - | |
Cla08g01165 | 1886 | CDD | MADS_MEF2_like | 2 | 75 | IPR033896 | GO:0000977|GO:0045944 | |
Cla08g01165 | 1886 | CDD | O-FucT_plant | 1309 | 1617 | IPR024709 | - | |
Cla08g01165 | 1886 | MobiDBLite | consensus disorder prediction | 1147 | 1167 | - | - | |
Cla08g01165 | 1886 | Coils | Coil | 81 | 115 | - | - | |
Cla08g01165 | 1886 | Gene3D | Adenoviral Proteinase; Chain A | 654 | 837 | - | - | |
Cla08g01165 | 1886 | PANTHER | UBIQUITIN-LIKE-SPECIFIC PROTEASE 2B-RELATED | 789 | 1656 | - | - | |
Cla08g01165 | 1886 | Gene3D | - | 13 | 80 | IPR036879 | GO:0003677|GO:0046983 | |
Cla08g01165 | 1886 | PANTHER | UBIQUITIN-LIKE-SPECIFIC PROTEASE 2B-RELATED | 789 | 1656 | - | - | |
Cla08g01165 | 1886 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Cla08g01165 | 1886 | Pfam | GDP-fucose protein O-fucosyltransferase | 1309 | 1612 | IPR019378 | - | |
Cla08g01165 | 1886 | Pfam | Ulp1 protease family, C-terminal catalytic domain | 686 | 775 | IPR003653 | GO:0006508|GO:0008234 | |
Cla08g01165 | 1886 | Pfam | Ulp1 protease family, C-terminal catalytic domain | 790 | 822 | IPR003653 | GO:0006508|GO:0008234 | |
Cla08g01165 | 1886 | ProSiteProfiles | K-box domain profile. | 88 | 178 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Cla08g01165 | 1886 | Coils | Coil | 151 | 178 | - | - | |
Cla08g01165 | 1886 | MobiDBLite | consensus disorder prediction | 461 | 507 | - | - | |
Cla08g01165 | 1886 | Pfam | K-box region | 89 | 172 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Cla08g01165 | 1886 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Cla08g01165 | 1886 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 | |
Cla08g01165 | 1886 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Cla08g01165 | 1886 | ProSiteProfiles | Ubiquitin-like protease family profile. | 671 | 812 | IPR003653 | GO:0006508|GO:0008234 | |
Cla08g01165 | 1886 | MobiDBLite | consensus disorder prediction | 461 | 483 | - | - | |
Cla08g01165 | 1886 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Cla08g01165 | 1886 | SUPERFAMILY | SRF-like | 3 | 74 | IPR036879 | GO:0003677|GO:0046983 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla01g01797 | Cla-Chr1:32894288 | Cla08g01165 | Cla-Chr8:24480113 | 4.48E-07 | dispersed | |
Cla08g01165 | Cla-Chr8:24480113 | Cla01g00610 | Cla-Chr1:6958059 | 3.10E-69 | dispersed | |
Cla10g00921 | Cla-Chr10:21905135 | Cla08g01165 | Cla-Chr8:24480113 | 4.14E-54 | dispersed | |
Cla03g01710 | Cla-Chr3:33072835 | Cla08g01165 | Cla-Chr8:24480113 | 2.54E-11 | transposed | |
Cla05g02536 | Cla-Chr5:36728385 | Cla08g01165 | Cla-Chr8:24480113 | 5.67E-16 | transposed | |
Cla09g01571 | Cla-Chr9:31214768 | Cla08g01165 | Cla-Chr8:24480113 | 6.58E-53 | transposed | |
Cla09g01577 | Cla-Chr9:31461967 | Cla08g01165 | Cla-Chr8:24480113 | 3.31E-96 | transposed | |
Cla01g01796 | Cla-Chr1:32884736 | Cla08g01165 | Cla-Chr8:24480113 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
61576 | PF10250 | O-FucT | 2.10E-45 | CL0113 | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla08g01165 | - | K08596 | csv:101206097 | 1409.05 |