Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01165 ATGGCGAGGGAGAAAATCAAGATAAAGAAGATTGATAACCTAACGGCGAGACAGGTGACATTCTCTAAGCGAAGGAGAGGGCTTATCAAGAAGGCGGAGGAGCTATCGGTGCTCTGCGACGCCGAAGTAGCGCTGCTCATCTTCTCCGCCACCGGAAAGTTCTTCGAATATTCCAACTCCAGTGTTAAGGATGTTATAGCTAGATATAATTTGCACTCTAGTAATCTTGGAAAGTTGGAATATCCATCCCTTGAGCTGCAGCTTGAAAATGAAAATAGCAATCACGTCCGATTGAACAAGGAAGTTGCAGATATGAGCCAACAACTTAGGCAGATGAGGGGAGAAGATCTTCAAGGATTGAACTTAGAAGATCTGAAGCAATTGGAAAGATTGCTTGAAGTTGGTCTCACACGAGTTCTTCAAACCAAGGAAAAGAAGATTATGAGTGAAATTAGTGCGCTTGAGCTTAAGGGAGCGAGGCTGATGGAAGAAAACAAGATGCTTAGACAGCAGATGTTAAGGTTGTCGAATGAAAGAACGCCAGTGCTCGTGGATTCCGACGTTCATGTGGCGGCGGAAGAAGGGGTTTCGTCGGAATCCGCCGCCAATGTCTGCAGCTGCAACAGCGGCCCTCCTGCCGACGACGACAGCTCCGACACTTCCCTCAAATTAGGCAAAGGCGTGAGGGAGCATCCAGCTGCTCATTGGTTCCATTTTGAGCAACCCAAGTGGGCCAAAAGCTTTGACACAAATCTGTGTTTGGTAAAACTCTGGCTTCTCCTCCCTGTTCATCGGAGCTTGCGCTGCGCTCTGATTTACGAATGTCAACACACTGAGTTCCTTTTGACTCGTTTTCAACTCACCGATCTTCCCTTCATCCCTCTCTTCGCCATGAAGAACGCCCCCGTCAAAGGCCTTGAAGTTTTCGATTTCACCGAAGAAGACGAACTTCCTGAATTGATCTCCGAGAAGCGCCTCAGCAAATTTAAAAACCCTAATCTCGAATCTAACGCTGTTTTGAAGTATGAATTTCTCGAATGTGGTAATTTAACCGTGATCAATGGATTCATTGTTGAAGGGAAGGAGATTGAAAATCCACACATGGATGTTGATTTGGATGAATGTAATCGTGGTTGTGACAATGGTATTTCACATAATCCTTTGGGCACAACTAAAGAGCAACAAATCATGGAAGAAGAGAAATATCAATTGGATGCCAATGCAAAATCAGAAGTGAAATGCCATTTGCAAGATATGATCGTGCAAGTAGATAATCATGTGACACAAAGCCTTTGCTCTCAACTTGGGAAAATTGGATCTAGCTCTCAAAGTCCTACCCAGGGGTTAACTTGCACTCTTCCTGAGTTTACTGCTGAAAGTGAGCAAGTTGATGCACTGTCAGATCCTAATGGAAGCATAAAAGGGAGTTCTCCAGTGAGCCCTCCTTCAGAAACTGTAGAGGATGGTGTTTTGTTGAACGGGAAGTCTTCAGATAATTGCTCATCTGACAATGAAAAGGATGATCTTAGTGACGAGGTTGTCCTTTATCCCGATTATATTGTATGTGGAGATTTTTACTGTGCCAGTCCCTCCTTAACCTTTTCACATAATGGCATCAAAATTAATGGTTTTGCTGATTATGGAAGCAATGAGTACCTTAACCTTGAATGGAGAGTCGACGATGTCATTCATATTGAGTGCCAGTGCTTTCAAAGGGTTGAATATGTGATGATCAAGCTCCATGTTATCTCAAAAGATGCTGGTGAATGTGACAATGCGTGTGACAGTTCTGGCATTAAGGAAGTAAAGATTGTTCTTGTTGATTCTTACTGGTCTGAGAAACAACAAAAAATCAGATCTTTGGATTCCAGATACATGGCTATTTGGAATATGTCTCTCGATGTGGGAATAGGATCCGATGATGATGATTTAAGTGGGCAGAGACACTATTTTCCCAACTTTGATGAGCCTTTTGAAGAAGTTGTCTATCCCAAAGGAGATCCAGATGCTGTTTCCATTAGTAAGAGGGATGTTGACTTGCTGCAACCAGAGACGTTTGTCAATGACACAATCATTGACTTTTACATCCAGTATTTGAAGAGCCAGATAGATCCCAAGGAGAAGCATAGATTTCACTTCTTCAATAGTTTTTTCTTTAGGAAGCTGGCAGACCTTGATAAAGATCCATCAAGTGCTTCAGATGGCAGAGCTGCCTTTCTACGTGTTCGGAAATGGACACGGAAAGTGGATTTATTTGACAAGGATTATATCTTCATTCCTATAAACTTCAATCTTCATTGGAGCTTAATGGTCATATGCCACCCTGGCGAAGTGGCTAGATATAGTGATGAAGACCTGATGAAGTCAATGAAACTTCCGCAGCAGGAAAATTCATTTGATTGCGGATTGTTCTTGCTCCACTATCTAGAACTTTTTCTGGCAGAAGCTCCTCTTGATTTTAGCCCGTTCAAAATCTCCAAGCTTTCAAAATTTCTTAATGTGGATTGGTTCCCACCTGCTGAGGCCTACCTCAAGCGAACTTTAATACAGAGATTAATTTTCGAAATCCTTGATAACCGATCTCGAGAAATGTCCGCAGCTGCTTGCAGTGATGAACTCTTGTCTAAATTTCCATCCAATAATGAGGATGAAACTGGTCTGGAGCTTCTTCCCGAAAGAGGAAGCCCAGCCGTGGCACGCAATCACAATTTGCCAAGCTCACAAGCTGTTGATGGGATTGAAATTACTCTATTATCTGAATCTTCCAGTAGACACAACCACTTCATTGACGGTTCTGGCTTGGTTGTCAGAGAATTATTTGAACCAGGCGCCTCTAATGGACCGTTACTTGGACACTACCAATCTTTTGGTCAAACATCATCGTATTTTGATTCAAATGGTACTGACACAGATGCAGAAACTGGAGACCGTTTCATGTACTTACCTCCACAACAGGATGGTTTGCAGCCAATTGATGCAATGACATCTCAAGCTTGTCGTTTTCCGTGTTCATCGAGAGGCCTTGAATCGGACCCTGCTTTTGACTTATGCATGTCTATTCAACAAGAGCAAGGCGGGGGCATTGCCTCGTCCCCGACAGATGACTTGGAAGACGTGGGAATCATTGAACATTCCAATGTTAGGGAAGCAAGTCCTGGTAACACAGAAGAAAGGAACGGAAAAGGGCCTCTACCGATCGAGAAGGAGAACCTGGAACCTGTAGCAGAATGCCCTACTTCTGCTGCTACCACGAAGAAAGATTTTGATGCCATTGTCTTCTCTCAAGATGACACTAACGAGGAAAATAACGGATCTGATAATCCCATGTGTAAAGAGACTCTCGTTGCACTGCCGCATCTAGATAAAGATATAACAACCAAAACAGACGTCGAACATGATGATGTGCTGGTGGTTGCTTCGGTTACTGAGGTGGACTTAGACGAGCAACCCCCTGCCAAGAAACCAAGGCGTTCGTCATACCACGAAGAAGCGAGTAACAACGGTGTCAGAGAAGGTTTGTTGGATGATGCAGAAAAACGGAAAAAACTGTTATTTTGGCTTTCCTCTCAGTCCCAACTCCGAATCTTCTTTGCCTTCAAAATCCAGTGTCCAATTCAAGCTGTGATCTCCAACAAACCAACAATGGAGCTTCACTACTACACTCATCGCAGCCCATCCCACAGAGCGGCTCTTGCTGGTGTTTTTCTTCTTCTCTTTCCTCTTTTTTATCCCAATCTCTTCCATCCCTTGGGTCGCGCTTCGCCTTCCTTGTTCTCTGAATGGATTTCTCCAAAACCGAGGCACCCGATTTTGCTACACAATGGCTCCTTCCTCATATACACGCATCTGATACCATGCAGTATCACCAAGAAAATCTCAAGGTTACATTCAAGTGTTCTTAGATGGAGGATTGAATCAGCAAAGAATGGGGTTGCCGTTGCCCGAATACTAAATGCAACATTGGTCATACCTCATCTTGAAGTTAACGCTGTTTGGAAGGATTCCAGTTCGTTTGGAGAAATTTTTGATGTGGATCACTTCATTAATGTCCTGCGTGATGATATATCAATAGTCAAAGAGCTGCCTGCTGAATACTCCTGGAGCACAAGGGAATACTATGCTACTGGAATCCGTAATACTAGAATTAAAACAGCTCCCACTCAAGCTTCTGCAAACTGGTACTTGGAAAATGTCTTGCCCGTATTGCAAAGCAATGGGATTGCTGCTATTGCTCCATTCTCTCACCGTCTGTCTTTCAACGACTTGCCTACTGAGATTCAGCATTTGCGTTGTAAGGTCAATTTCAAGGCATTAGCATTTGTTCGTGACATCACTAAATTAGGAGATACCATTGTCAACCGCCTTCGTTACTCTTCAAATCAAAAGGGAATGGAAGGCGCTGAGAATCTGCTAGAGGATGAGACAAGAAAATTGGAAGGTGGGAAATTTGTTGTATTGCATCTCCGATTCGATAAGGGAAGGGTTCCTAACTCACAGTTCACTGATGAAGAGTTGAGATATCAGGGACGTTGCCCCTTGACTCCTGAAGAGATAGGATTGCTGCTAGCTGCTCTGGGGTTTAGCAATAGTACACGTGTCTATCTTGCTATACACAAGGTTTATGGTGGGGAAGCAAGAGTCTCAACTTTGCGCAAAATATTCCCGCTCCTGGAAGATAAGAAGAGCCTTACCTCTCCCTTGGAACGTGCTCGTGTAGCAGGCAAAGCATCATTATCAGCTGCAGTTGATTATTATGTGAGCATGCACAGCGACATCTTCATTTCTGCCTCGCCTGGAAACATGCACAACGCTCTGGTGGGACATCGGGCATACTTGAACATGAAAACTATAAGGCCAAACATGGTACTGTTGGGTCAGCTGTTCCTCAATAAGAGCATGGAATGGTCAGAATTCAGGAAGGCTGTTCTCGCTGGACATAAAAATAGACAAGGGCAGATCAGGTTAAGGAAAGAGAAGCAATCCATATACACTTATCCTGCTCCTGATTGCATGTGCGCTAACCTTATCATTACTCAAATCTACTCATATTATTACAGCTTTGGCTTTCTCTTAAGCTCTGCATTTCATTTTCGCATCGCTTCAAAAATCAGGAGAATAATTGGGAGAAGGCAAACCCTCGGCCTCGAGTTGACTACTCATCAATCATTTTTTGTCGCACCTGGAACTGCAGGCATTTGGCCATCTTTCATATCCTTACTGTTGCCGGGAAACTCACTCCCATTCCTCTGTGTCGAAATTTCTTTTGAATCCAAATCTTCATCAATTGGAAGAGTTCTTTTCGAGCCTTCTAACGCAACTCCCAGGACAATATTCTCCTCCAATGGTGCCCTCGCCACTGATGGCGATGCAGAGGTCTTCTCGCCGTCTTGCTTATTCTGTGAGCTTGAGGAAGGAATATCAGCTTTCTCACTGCTAGGACTGGAAGCTGAGGGAGATCTTTTGGGCGGAGTCCCTCGTGGCATATTGTCCTTGGAATTCATTCCTATGACATCTTTCTTTTCTCCTTTTATCTCATTGCTTGCTAGATTTGATGTTGATCCAGCTGTGTCGGGGGCTTTTGTCCCTGACATTGAGACTGCCTCTTGTTTCGCTTCCTTTTCTTCGTTAGATGAACGAGTGGGACGACTAGAGACTTTG 5658 43.85 MAREKIKIKKIDNLTARQVTFSKRRRGLIKKAEELSVLCDAEVALLIFSATGKFFEYSNSSVKDVIARYNLHSSNLGKLEYPSLELQLENENSNHVRLNKEVADMSQQLRQMRGEDLQGLNLEDLKQLERLLEVGLTRVLQTKEKKIMSEISALELKGARLMEENKMLRQQMLRLSNERTPVLVDSDVHVAAEEGVSSESAANVCSCNSGPPADDDSSDTSLKLGKGVREHPAAHWFHFEQPKWAKSFDTNLCLVKLWLLLPVHRSLRCALIYECQHTEFLLTRFQLTDLPFIPLFAMKNAPVKGLEVFDFTEEDELPELISEKRLSKFKNPNLESNAVLKYEFLECGNLTVINGFIVEGKEIENPHMDVDLDECNRGCDNGISHNPLGTTKEQQIMEEEKYQLDANAKSEVKCHLQDMIVQVDNHVTQSLCSQLGKIGSSSQSPTQGLTCTLPEFTAESEQVDALSDPNGSIKGSSPVSPPSETVEDGVLLNGKSSDNCSSDNEKDDLSDEVVLYPDYIVCGDFYCASPSLTFSHNGIKINGFADYGSNEYLNLEWRVDDVIHIECQCFQRVEYVMIKLHVISKDAGECDNACDSSGIKEVKIVLVDSYWSEKQQKIRSLDSRYMAIWNMSLDVGIGSDDDDLSGQRHYFPNFDEPFEEVVYPKGDPDAVSISKRDVDLLQPETFVNDTIIDFYIQYLKSQIDPKEKHRFHFFNSFFFRKLADLDKDPSSASDGRAAFLRVRKWTRKVDLFDKDYIFIPINFNLHWSLMVICHPGEVARYSDEDLMKSMKLPQQENSFDCGLFLLHYLELFLAEAPLDFSPFKISKLSKFLNVDWFPPAEAYLKRTLIQRLIFEILDNRSREMSAAACSDELLSKFPSNNEDETGLELLPERGSPAVARNHNLPSSQAVDGIEITLLSESSSRHNHFIDGSGLVVRELFEPGASNGPLLGHYQSFGQTSSYFDSNGTDTDAETGDRFMYLPPQQDGLQPIDAMTSQACRFPCSSRGLESDPAFDLCMSIQQEQGGGIASSPTDDLEDVGIIEHSNVREASPGNTEERNGKGPLPIEKENLEPVAECPTSAATTKKDFDAIVFSQDDTNEENNGSDNPMCKETLVALPHLDKDITTKTDVEHDDVLVVASVTEVDLDEQPPAKKPRRSSYHEEASNNGVREGLLDDAEKRKKLLFWLSSQSQLRIFFAFKIQCPIQAVISNKPTMELHYYTHRSPSHRAALAGVFLLLFPLFYPNLFHPLGRASPSLFSEWISPKPRHPILLHNGSFLIYTHLIPCSITKKISRLHSSVLRWRIESAKNGVAVARILNATLVIPHLEVNAVWKDSSSFGEIFDVDHFINVLRDDISIVKELPAEYSWSTREYYATGIRNTRIKTAPTQASANWYLENVLPVLQSNGIAAIAPFSHRLSFNDLPTEIQHLRCKVNFKALAFVRDITKLGDTIVNRLRYSSNQKGMEGAENLLEDETRKLEGGKFVVLHLRFDKGRVPNSQFTDEELRYQGRCPLTPEEIGLLLAALGFSNSTRVYLAIHKVYGGEARVSTLRKIFPLLEDKKSLTSPLERARVAGKASLSAAVDYYVSMHSDIFISASPGNMHNALVGHRAYLNMKTIRPNMVLLGQLFLNKSMEWSEFRKAVLAGHKNRQGQIRLRKEKQSIYTYPAPDCMCANLIITQIYSYYYSFGFLLSSAFHFRIASKIRRIIGRRQTLGLELTTHQSFFVAPGTAGIWPSFISLLLPGNSLPFLCVEISFESKSSSIGRVLFEPSNATPRTIFSSNGALATDGDAEVFSPSCLFCELEEGISAFSLLGLEAEGDLLGGVPRGILSLEFIPMTSFFSPFISLLARFDVDPAVSGAFVPDIETASCFASFSSLDERVGRLETL 1886
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24480113 24511431 - ClCG08G011690.1 Cla08g01165 278820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01165 1886 MobiDBLite consensus disorder prediction 1146 1167 - -
Cla08g01165 1886 PANTHER UBIQUITIN-LIKE-SPECIFIC PROTEASE 2B-RELATED 305 793 - -
Cla08g01165 1886 MobiDBLite consensus disorder prediction 202 221 - -
Cla08g01165 1886 MobiDBLite consensus disorder prediction 202 216 - -
Cla08g01165 1886 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cla08g01165 1886 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cla08g01165 1886 SUPERFAMILY Cysteine proteinases 663 855 IPR038765 -
Cla08g01165 1886 PANTHER UBIQUITIN-LIKE-SPECIFIC PROTEASE 2B-RELATED 305 793 - -
Cla08g01165 1886 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Cla08g01165 1886 CDD O-FucT_plant 1309 1617 IPR024709 -
Cla08g01165 1886 MobiDBLite consensus disorder prediction 1147 1167 - -
Cla08g01165 1886 Coils Coil 81 115 - -
Cla08g01165 1886 Gene3D Adenoviral Proteinase; Chain A 654 837 - -
Cla08g01165 1886 PANTHER UBIQUITIN-LIKE-SPECIFIC PROTEASE 2B-RELATED 789 1656 - -
Cla08g01165 1886 Gene3D - 13 80 IPR036879 GO:0003677|GO:0046983
Cla08g01165 1886 PANTHER UBIQUITIN-LIKE-SPECIFIC PROTEASE 2B-RELATED 789 1656 - -
Cla08g01165 1886 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cla08g01165 1886 Pfam GDP-fucose protein O-fucosyltransferase 1309 1612 IPR019378 -
Cla08g01165 1886 Pfam Ulp1 protease family, C-terminal catalytic domain 686 775 IPR003653 GO:0006508|GO:0008234
Cla08g01165 1886 Pfam Ulp1 protease family, C-terminal catalytic domain 790 822 IPR003653 GO:0006508|GO:0008234
Cla08g01165 1886 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cla08g01165 1886 Coils Coil 151 178 - -
Cla08g01165 1886 MobiDBLite consensus disorder prediction 461 507 - -
Cla08g01165 1886 Pfam K-box region 89 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cla08g01165 1886 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cla08g01165 1886 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cla08g01165 1886 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cla08g01165 1886 ProSiteProfiles Ubiquitin-like protease family profile. 671 812 IPR003653 GO:0006508|GO:0008234
Cla08g01165 1886 MobiDBLite consensus disorder prediction 461 483 - -
Cla08g01165 1886 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cla08g01165 1886 SUPERFAMILY SRF-like 3 74 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01797 Cla-Chr1:32894288 Cla08g01165 Cla-Chr8:24480113 4.48E-07 dispersed
Cla08g01165 Cla-Chr8:24480113 Cla01g00610 Cla-Chr1:6958059 3.10E-69 dispersed
Cla10g00921 Cla-Chr10:21905135 Cla08g01165 Cla-Chr8:24480113 4.14E-54 dispersed
Cla03g01710 Cla-Chr3:33072835 Cla08g01165 Cla-Chr8:24480113 2.54E-11 transposed
Cla05g02536 Cla-Chr5:36728385 Cla08g01165 Cla-Chr8:24480113 5.67E-16 transposed
Cla09g01571 Cla-Chr9:31214768 Cla08g01165 Cla-Chr8:24480113 6.58E-53 transposed
Cla09g01577 Cla-Chr9:31461967 Cla08g01165 Cla-Chr8:24480113 3.31E-96 transposed
Cla01g01796 Cla-Chr1:32884736 Cla08g01165 Cla-Chr8:24480113 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61576 PF10250 O-FucT 2.10E-45 CL0113 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01165 - K08596 csv:101206097 1409.05