Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01168 ATGAAAGGCGATTTTGCTCATCCCAAGAGCAAAACTTCCAATATGTTATCCAAATTCCATCTCTCCGCCCACCCTTTTTCCCACCATCCTCCGCCGCAACAACCCGCCGACGAGCCCACCGCCGCCGTGCCTTCCCCCTTTAAACACCGCCCGGAGCTAACTTCCACCGCTGATGGTTCCACCATCGAGGTGGTCCGACGGCCAAGGGGTCGCCCACCGGGTTCCAAAAATAAACCCAAACCGCCTCTTGTTATAACCCGGGAACCCGAACCGGCTATGCGGCCGTACGTTCTAGAAGTGCCTGGTGGAAACGACGTCGTTGAAGCTATTTCACGATTTTGCCGTCGCAAAAATATGGGCCTTTGTGTTCTTAACGGTTCCGGTACCGTTGCTAATGTCTCTCTCCGTCAACCCTCCGCCACACCTGGCGCTACCGTTACTTTTCACGGCCGTTTTGAGATTCTCTCCATTTCCGCTACCGTCTTCCCTCAAACCACGCCGTTACCTTTGCCTAATGGTTTTACCATCTCCCTCGCCGGACCTCAGGGTCAAATCGTCGGCGGTTTGGTCGCCGGTGCTTTAATTGCCGCCGGTACCGTTTTTGTCGTTGCCTCGTCGTTCAATAATCCGCTGTACCACCGGCTTCCCGATGAGGAAGAGATTAAGAATTTGGGATCCGGTGGCGGCAGTGGCGGTGGCGAAGTTCATTCCCCACACGTCTCTGGCGGTGGAGATAGTAGCGGGCACGGGCAGGGGCAGAGTCAAGGGCACGGGCAGCTGGTGGAATCGTGTGGAATGGCTATGTATAGTTGCCACGCTCCGTCCGACGTAATATGGGCGCCGACGGCGAGACAACCGCCGCCGCCGCCGTACTAA 876 56.62 MKGDFAHPKSKTSNMLSKFHLSAHPFSHHPPPQQPADEPTAAVPSPFKHRPELTSTADGSTIEVVRRPRGRPPGSKNKPKPPLVITREPEPAMRPYVLEVPGGNDVVEAISRFCRRKNMGLCVLNGSGTVANVSLRQPSATPGATVTFHGRFEILSISATVFPQTTPLPLPNGFTISLAGPQGQIVGGLVAGALIAAGTVFVVASSFNNPLYHRLPDEEEIKNLGSGGGSGGGEVHSPHVSGGGDSSGHGQGQSQGHGQLVESCGMAMYSCHAPSDVIWAPTARQPPPPPY 291
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24555865 24556740 + ClCG08G011720.1 Cla08g01168 278823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01168 291 Pfam Plants and Prokaryotes Conserved (PCC) domain 94 209 IPR005175 -
Cla08g01168 291 PIRSF ESCAROLA 9 290 IPR014476 GO:0003680
Cla08g01168 291 Gene3D - 93 225 - -
Cla08g01168 291 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 45 290 IPR014476 GO:0003680
Cla08g01168 291 ProSiteProfiles PPC domain profile profile. 90 228 IPR005175 -
Cla08g01168 291 MobiDBLite consensus disorder prediction 222 258 - -
Cla08g01168 291 MobiDBLite consensus disorder prediction 244 258 - -
Cla08g01168 291 SUPERFAMILY AF0104/ALDC/Ptd012-like 92 219 - -
Cla08g01168 291 CDD DUF296 94 207 IPR005175 -
Cla08g01168 291 MobiDBLite consensus disorder prediction 1 86 - -
Cla08g01168 291 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 17-RELATED 45 290 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g01168 Cla-Chr8:24555865 Cla05g00274 Cla-Chr5:2486749 2.95E-53 dispersed
Cla03g01208 Cla-Chr3:25694792 Cla08g01168 Cla-Chr8:24555865 1.85E-44 transposed
Cla11g01421 Cla-Chr11:27769884 Cla08g01168 Cla-Chr8:24555865 4.16E-101 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01168 - - bhj:120075835 464.151