Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01178 ATGTCATCGTCCCCAACTTTAATCCAACGGCTCTCATTTAACGCTTATTCTACGTTCGTCGTAGTCTGTACCATTTTTTTCTGCTCGCCGGAGTTCAAAATGGCCGCCACCGTGCCGGAAAATCTCTCTCGCGAGCAATATGTGTATCTAGCGAAGCTTGCCGAGCAGGCTGAAAGATATGAGGAGATGGTTCAGTTCATGCAGAAACTTGTTCTTGGTTCAACCCCAGGCTCTGAGCTCTCTGTCGAGGAGCGAAATCTTCTCTCTGTCGCTTACAAGAACGTGATTGGCTCACTTCGAGCCGCTTGGCGGATTGTCTCTTCCATCGAGCAAAAGGAGGAGAGCCGTAAGAATGAAGAGCATGTTGTTCTTGTTAAGGATTACAGATCAAAGGTTGAGGCTGAGCTTTCCGACGTCTGTGCGAGTATTTTGCAGCTTTTGGACTCGAATCTTATTCCCTCCGCCTCTGCTAGTGAGTCTAAGGTCTTCTACTTGAAGATGAAAGGGGATTACCATAGGTATTTGGCGGAGTTTAAGGTTGGGGATGAGAGGAAAGCCGCTGCTGAGGATACTATGCTGGCTTATAGAGCTGCTCAGGATGTCGCAGTTGCAGATCTTGCACCCACTCATCCGATAAGGCTAGGGCTGGCACTCAATTTCTCTGTGTTTTACTTCGAGATTCTGAATCAGTCCGATAAAGCATGTAGCATGGCCAAGGAGGCATTTGAGGAAGCCATTGCTGAACTGGACACTTTGGGTGAAGAATCATACAAGGACAGTACCCTCATCATGCAACTATTGAGGGACAACCTCACTCTCTGGACTTCAGATGCTCAGGACCAGTTAGATGAGTCATAG 858 47.79 MSSSPTLIQRLSFNAYSTFVVVCTIFFCSPEFKMAATVPENLSREQYVYLAKLAEQAERYEEMVQFMQKLVLGSTPGSELSVEERNLLSVAYKNVIGSLRAAWRIVSSIEQKEESRKNEEHVVLVKDYRSKVEAELSDVCASILQLLDSNLIPSASASESKVFYLKMKGDYHRYLAEFKVGDERKAAAEDTMLAYRAAQDVAVADLAPTHPIRLGLALNFSVFYFEILNQSDKACSMAKEAFEEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDAQDQLDES 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24669651 24674073 + ClCG08G011820.2 Cla08g01178 278833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01178 285 ProSitePatterns 14-3-3 proteins signature 2. 257 276 IPR023409 -
Cla08g01178 285 SMART 1433_4 44 284 IPR023410 -
Cla08g01178 285 PANTHER 14-3-3 PROTEIN 41 281 IPR000308 -
Cla08g01178 285 PIRSF 14-3-3 39 285 IPR000308 -
Cla08g01178 285 Gene3D - 28 285 IPR036815 -
Cla08g01178 285 Pfam 14-3-3 protein 50 275 IPR023410 -
Cla08g01178 285 Coils Coil 50 70 - -
Cla08g01178 285 PANTHER BNAC02G00320D PROTEIN 41 281 - -
Cla08g01178 285 SUPERFAMILY 14-3-3 protein 43 277 IPR036815 -
Cla08g01178 285 PRINTS 14-3-3 protein zeta signature 79 108 IPR000308 -
Cla08g01178 285 PRINTS 14-3-3 protein zeta signature 248 277 IPR000308 -
Cla08g01178 285 PRINTS 14-3-3 protein zeta signature 128 152 IPR000308 -
Cla08g01178 285 PRINTS 14-3-3 protein zeta signature 159 181 IPR000308 -
Cla08g01178 285 PRINTS 14-3-3 protein zeta signature 194 220 IPR000308 -
Cla08g01178 285 PRINTS 14-3-3 protein zeta signature 221 247 IPR000308 -
Cla08g01178 285 ProSitePatterns 14-3-3 proteins signature 1. 85 95 IPR023409 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g01123 Cla-Chr8:23987753 Cla08g01178 Cla-Chr8:24669651 2.24E-133 dispersed
Cla08g01178 Cla-Chr8:24669651 Cla11g01392 Cla-Chr11:27459767 4.99E-135 dispersed
Cla11g01412 Cla-Chr11:27684693 Cla08g01178 Cla-Chr8:24669651 7.50E-154 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01178 K06630 - csv:101222827 481.87