Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01182 ATGGTGGTTAGAAAAGTCGGCAAATACGAGGTCGGGAGGACGATTGGGGAAGGTACTTTCGCAAAGGTAAAGTTTGCTCAGAACACTGAGACTGGCGAGAGTGTTGCTATGAAAGTCCTCGATCGGAGCACCATAATCAAGCACAAGATGGTCGACCAGATAAAGAAGGAGATTTCTATCATGAAGCTTGTGAGGCACCCTTATGTTGTTCGTCTTCATGAGGTTCTTGCAAGCCGTACAAAGATTTACATAATCTTGGAGTACATTACTGGTGGTGAATTGTTTGACAAAATAGTTCATAATGGACGGCTTAGTGAAGCTGAATCTAGGAAGTATTTCCAACAGCTAATTGATGGTGTAGATTATTGCCACAGCAAGGGAGTATACCACAGAGATTTAAAGCCTGAGAATCTGCTACTTGACTCCCTCGGTAATTTAAAGATCTCAGACTTTGGTCTGAGTGCATTGCCTGAACAAGGAGTTAGCCTACTCCGCACAACATGTGGGACTCCAAACTATGTAGCACCAGAGGTGCTCAATCACAAGGGTTATGATGGTGCTATGGCAGACGTTTGGTCCTGTGGGGTAATCCTTTATGTGTTGATGGCAGGATATCTTCCATTTGACGACCTTGATCTCACCACGTTATATAGTAAGATTGAGAGAGCCGACTTTTCATGTCCCTCTTGGTTCCCGGTGGGGGCAAAAGCCTTAATCCAAAGAATATTTGATCCCAATCCTTCAACTCGTATTACAATTGAACAGATCAGAGAGGAAGAGTGGTTCAAGAAAAATTATGTTTCTGTCAAACTGTTTGAAGATGAAGATGTAAATCTGGATGATGTAAATGCTGTCTTTGATGATCCTGAGGAACAACTGACAGAAGAACAACACGGTCACGACGATATGAGCCCTCTGGCCCTTAATGCATTTGATTTAATAATTCTATCTCAAGGCTTAAACCTGGGAACAATGTTTGACCGTGGCCGGGATTCTATGAAGTACCCGACACGCTTCATCTGCCAAAAGCCTGCAAAGGTTTTACTGTCAACAATGGAAGTTGTAGCTCAATCAATGGGTTACAAGACTCACATTCGCAATTACAAGATGAGAGTAGAAGGCCCATCGGCAAGCAAAACTTCGTATTTCTCAGTCATTATGGAAATTTTCGAAGTTGCTCCCACATTCTTTATGGTGGACATCCAGAAAGCAGCAGGGGAAACCAGCGAATACCTCAAGTTCTACAAGAGCTTTTATAGCAAACTTGAAGATATCATCTGGAAACCTTCAATTGACACCGGCAAATCAAGGATCACCAAGAACAAGAGTAAAAAACGTTGA 1341 42.58 MVVRKVGKYEVGRTIGEGTFAKVKFAQNTETGESVAMKVLDRSTIIKHKMVDQIKKEISIMKLVRHPYVVRLHEVLASRTKIYIILEYITGGELFDKIVHNGRLSEAESRKYFQQLIDGVDYCHSKGVYHRDLKPENLLLDSLGNLKISDFGLSALPEQGVSLLRTTCGTPNYVAPEVLNHKGYDGAMADVWSCGVILYVLMAGYLPFDDLDLTTLYSKIERADFSCPSWFPVGAKALIQRIFDPNPSTRITIEQIREEEWFKKNYVSVKLFEDEDVNLDDVNAVFDDPEEQLTEEQHGHDDMSPLALNAFDLIILSQGLNLGTMFDRGRDSMKYPTRFICQKPAKVLLSTMEVVAQSMGYKTHIRNYKMRVEGPSASKTSYFSVIMEIFEVAPTFFMVDIQKAAGETSEYLKFYKSFYSKLEDIIWKPSIDTGKSRITKNKSKKR 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24692033 24700163 - ClCG08G011860.2 Cla08g01182 278837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01182 446 ProSiteProfiles NAF domain profile. 303 327 IPR018451 GO:0007165
Cla08g01182 446 Gene3D Transferase(Phosphotransferase) domain 1 3 306 - -
Cla08g01182 446 CDD CIPK_C 309 424 - -
Cla08g01182 446 Pfam NAF domain 305 363 IPR004041 GO:0007165
Cla08g01182 446 PANTHER - 2 443 - -
Cla08g01182 446 ProSitePatterns Protein kinases ATP-binding region signature. 15 47 IPR017441 GO:0005524
Cla08g01182 446 Gene3D Kinase associated domain 1, KA1 307 428 - -
Cla08g01182 446 SUPERFAMILY Protein kinase-like (PK-like) 6 286 IPR011009 -
Cla08g01182 446 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 2 443 - -
Cla08g01182 446 SMART serkin_6 9 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla08g01182 446 ProSitePatterns Serine/Threonine protein kinases active-site signature. 128 140 IPR008271 GO:0004672|GO:0006468
Cla08g01182 446 Pfam Protein kinase domain 9 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla08g01182 446 ProSiteProfiles Protein kinase domain profile. 9 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00055 Cla-Chr5:609156 Cla08g01182 Cla-Chr8:24692033 3.03E-169 dispersed
Cla06g01118 Cla-Chr6:24015221 Cla08g01182 Cla-Chr8:24692033 4.66E-179 dispersed
Cla08g01182 Cla-Chr8:24692033 Cla02g01868 Cla-Chr2:33859354 5.48E-147 dispersed
Cla08g01182 Cla-Chr8:24692033 Cla03g00613 Cla-Chr3:7315854 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80750 PF00069 Pkinase 2.60E-71 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01182 - - csv:101222107 841.647