Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01184 ATGGAGCTCGACGAACACGTCTTCTTAGAGGAGTTAATGGCTCTACGAAGAGATGCAAATTGGGAAGCCATTCCAACCGAAATCACCGATCTCTGCTCAAATGCTTGGGCATTCGATTACTGTTTCGATCAAAGCACTGTAAATTTTCCCCCAAATTCTTCTTCAGAACCTCTCTCCGCTCAGAATCTCGACGAATTTTACCATCCTTTAGCAAATGAGTTCTCAGTACCACAAATGCCTGATTCCGCTTATACCGCCATGGAAGTAGCAGCAGCAGCCACTGCGCCTCTGCCATTTCAACCAGCGCATCCGAATGTGGAGCGAGAAGAAGAGGAAGAGGAACTAGGTTTTCTCGCGGATGAGATTCAGAATATGGAAACAGTTCAAGTTGAATCGGCTTGTAAAATGGAGCCGAACCAATCTCCAGAAGAACTCCAGGTTTTCAACATCGGAACATGCTCCTCCCTGGAACGAAAGAACAGAGCGAAGAAATTGCAAGGCCAACCATCAAAGAATCTCATGGCGGAGAGAAGGAGAAGGAAGCGGTTGAACGATCGCCTCTCAATGCTCAGATCCATTGTCCCGAAGATCAGTAAGATGGACAGAACAGCGATTCTGGCAGATGCGATTGAGTATATGAAAGAATTGCTGGAGAAGATCGGGAATCTGCAAAGCGAAGTAGAAGGATCAAATCCGAGGACGAATTCATTGAAGAACACAAAACCGAGTGAATTCGTAGTGAGGAATTCACCAAAATTTGAAGTAGAAAACAGAAATGGAGACACGAGAATCGAGATTTGCTGTGCGGGAAAGCCAGGATTGGTATTATCAACGGTGAATACGATTGAAGCATTGGGGCTTGAGATTCAACAGTGTGTAATTAGCTGCTTCAATGACTTCGCATTGCAAGCTACTTGTTCTTCTCAGGAACTGAAGCAGAGAACAGAACTGAAGCCTGAAGAATTGAAGGAAGCTTTATTTAGGAATGCAGGCTATGGAGGAAGCTGCTTGTAG 1014 45.07 MELDEHVFLEELMALRRDANWEAIPTEITDLCSNAWAFDYCFDQSTVNFPPNSSSEPLSAQNLDEFYHPLANEFSVPQMPDSAYTAMEVAAAATAPLPFQPAHPNVEREEEEEELGFLADEIQNMETVQVESACKMEPNQSPEELQVFNIGTCSSLERKNRAKKLQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTAILADAIEYMKELLEKIGNLQSEVEGSNPRTNSLKNTKPSEFVVRNSPKFEVENRNGDTRIEICCAGKPGLVLSTVNTIEALGLEIQQCVISCFNDFALQATCSSQELKQRTELKPEELKEALFRNAGYGGSCL 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24732139 24734657 + ClCG08G011880.1 Cla08g01184 278839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01184 337 PANTHER DNA BINDING PROTEIN 3 337 - -
Cla08g01184 337 CDD ACT_UUR-ACR-like 262 303 - -
Cla08g01184 337 Pfam Helix-loop-helix DNA-binding domain 173 216 IPR011598 GO:0046983
Cla08g01184 337 Coils Coil 206 226 - -
Cla08g01184 337 Gene3D - 156 231 IPR036638 GO:0046983
Cla08g01184 337 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 167 216 IPR011598 GO:0046983
Cla08g01184 337 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 3 337 - -
Cla08g01184 337 Coils Coil 108 128 - -
Cla08g01184 337 SMART finulus 173 222 IPR011598 GO:0046983
Cla08g01184 337 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 171 234 IPR036638 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla08g01184 Cla11g01450 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00378 Cla-Chr3:4383133 Cla08g01184 Cla-Chr8:24732139 2.54E-32 dispersed
Cla05g01333 Cla-Chr5:17163333 Cla08g01184 Cla-Chr8:24732139 3.04E-37 dispersed
Cla08g01184 Cla-Chr8:24732139 Cla02g00417 Cla-Chr2:4095436 8.57E-18 dispersed
Cla01g01776 Cla-Chr1:32712626 Cla08g01184 Cla-Chr8:24732139 2.88E-72 wgd
Cla11g01450 Cla-Chr11:28134276 Cla08g01184 Cla-Chr8:24732139 5.59E-94 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61578 PF00010 HLH 6.20E-10 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01184 - - csv:101221329 564.688