Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01190 ATGGTGATGCCGGAGTCCTCTGAGGGCCACCGGACGGCGTCTCGTCGAGCGAATCGACCGCCGACTCGACCGCTTGTCGCACCTAGGGTTCCGCTGAGACGGTTACTCCGCGTCGCATCTATCGCATGTGGAATTCAATTCGGTTGGGCTTTGCAGCTCTCTCTTCTCACTCCTTATATTCAAGAGCTCGGTATTCCTCACGCTTGGTCTAGTCTCATATGGCTCTGCGGACCGCTTTCCGGCCTCTTTGTCCAACCACTTGTTGGTCATATGAGCGATCACTGCACCAGCCGATACGGCCGCCGGAGGCCGTTCATCGTCGTTGGAGCGCTTTCTATAGTACTCGCCGTTTTGATTATTGGTTACTCGGCGGACCTCGGTTGGTTGATTGGTGACAGAGGTGATGTTAGGCCTCGCGCGATTGGATTCTTTGTGGTTGGTTTTTGGATTCTCGACGTTGCTAACAACGTCTCCCAGGGTCCGTGTAGAGCTCTGCTTGCTGATCTTACCGGAAAGGATCATCGAAGGAATCGAGTGGCAAATGCTTATTTTTCTCTATTTATCGCTATTGGTAATGTTTTTGGATATGCGACTGGATCTTTTAGTGGCTGGTACAAGATCTTCCCGTTTACTCGTACCTCTGCATGTTCTGTTAATTGTGCAAATCTCAAGTCAGCTTTCTTGATTGATATTGTGTTCATTGCAATTACAACATATTTGAGTGTATCAGCAGCTCAAGAGTTGCCTCTAGTTTCAAGCGACAGGTCCTCCCTGGTTTTAGAAGAAGGTATGGGGCAGTCAAGTCATGCTTCAGAAGCATTTCTCTGGGACTTGTTACGGACTTTTAGACACTTCTCTGGGTATATATGGGTAATTTTGGTTGTCACTTCCCTGACATGGATAGCATGGTTCCCATTTATTCTCTTTGATACTGATTGGATGGGTAGAGAGATCTATGGTGGCAAGCCAAATGAAGGACAGGCTTATAGTTCTGGAGTCAGAATGGGAGCATTTGGTCTGATGTGTAACTCTGTTGTCCTCGGAATAACTTCATTACTTATGGAGAAGCTGTGCAGAAAGTGGGGTGCTGGTTTCATATGGGGAATCTCTAATATTTTTATGGGTCTATGTTTTCTTACTATCCTGGTTGTTACGTATGTGGCAAACAATATGGGCTATATAGGTCATGATCTCCCACCAAATAGTATTGTATCAGCTGCATTGATTATCTTTGCTCTTCTTGGCGCCCCTTTGGCAATTACTTACAGTGTTCCATATGCCATGATCTCCTCACGTGTTGAATCTTTACAACTTGGTCAAGGTTTGTCTGCGGGTGTCTTGAACTTAGCAATAGTTTTCCCACAGGAGTTTTCTCTCAACCTATTAAACACCAACAGGAATATATATATAATATGTATGCCTCGGACAGCATTGATTTTGATGACAATATGTTGTTTTCTATTTGTCACTACACGAGGGTTGTGGTGTCCCTGGGAAGTGGACCATGGGATCAGCTGTTTGGTGGTGGAAACTCTCCAGCTTTTGCTGTAG 1551 45.78 MVMPESSEGHRTASRRANRPPTRPLVAPRVPLRRLLRVASIACGIQFGWALQLSLLTPYIQELGIPHAWSSLIWLCGPLSGLFVQPLVGHMSDHCTSRYGRRRPFIVVGALSIVLAVLIIGYSADLGWLIGDRGDVRPRAIGFFVVGFWILDVANNVSQGPCRALLADLTGKDHRRNRVANAYFSLFIAIGNVFGYATGSFSGWYKIFPFTRTSACSVNCANLKSAFLIDIVFIAITTYLSVSAAQELPLVSSDRSSLVLEEGMGQSSHASEAFLWDLLRTFRHFSGYIWVILVVTSLTWIAWFPFILFDTDWMGREIYGGKPNEGQAYSSGVRMGAFGLMCNSVVLGITSLLMEKLCRKWGAGFIWGISNIFMGLCFLTILVVTYVANNMGYIGHDLPPNSIVSAALIIFALLGAPLAITYSVPYAMISSRVESLQLGQGLSAGVLNLAIVFPQEFSLNLLNTNRNIYIICMPRTALILMTICCFLFVTTRGLWCPWEVDHGISCLVVETLQLLL 516
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24829466 24834987 - ClCG08G011940.2 Cla08g01190 278845

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01190 516 PANTHER SUGAR TRANSPORTER 12 455 - -
Cla08g01190 516 Pfam MFS/sugar transport protein 48 195 - -
Cla08g01190 516 MobiDBLite consensus disorder prediction 1 25 - -
Cla08g01190 516 CDD MFS_SLC45_SUC 35 455 - -
Cla08g01190 516 SUPERFAMILY MFS general substrate transporter 33 488 IPR036259 -
Cla08g01190 516 Gene3D MFS general substrate transporter like domains 32 490 IPR036259 -
Cla08g01190 516 TIGRFAM GPH_sucrose: sucrose/H+ symporter 30 457 IPR005989 GO:0005887|GO:0008515|GO:0015770
Cla08g01190 516 PANTHER SUCROSE/H+ SYMPORTER, PLANT, MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN-RELATED 12 455 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01190 K15378 SLC45A1_2_4; solute carrier family 45, member 1/2/4 - csv:101220384 845.114
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g01190 Cla-Chr8:24829466 Cla09g02134 Cla-Chr9:38949214 1.17E-130 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g575 Blo01g01786 . . . Bpe02g00155 . . Bma01g02572 . Cmo12g00183 . . . Car12g00209 Sed08g1987 . Cpe07g00193 Bhi04g00897 Tan02g2516 Cmetu03g0103 . Hepe10g0399 . Lcy13g1450 Cla08g01190 Cam08g1654 Cec08g1231 Cco08g1350 Clacu08g1351 . Cre08g1137 . . . . . . . Cme03g01774 . . Bda11g00815 . . . . Bma02g00169 . . . Cma12g00228 . Car05g00514 . . . . . . . . . . . . . . . . . Lsi08g01052 Csa02g02236 Chy03g01280 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla11g00966 . 14 484 Sucrose Transporter Gene Family AT1G22710 62.8 5.4e-174 607.8
Cla11g00703 . 14 484 Sucrose Transporter Gene Family AT1G22710 62.6 7.1e-174 607.4
Cla08g01190 . 32 455 Sucrose Transporter Gene Family AT1G22710 50.7 1.3e-122 437.2
Cla11g00966 . 14 479 Sucrose Transporter Gene Family AT2G14670 63.2 2.2e-172 602.4
Cla11g00703 . 14 479 Sucrose Transporter Gene Family AT2G14670 63.0 1.4e-171 599.7
Cla08g01190 . 31 455 Sucrose Transporter Gene Family AT2G14670 51.5 1.0e-121 434.1
Cla11g00966 . 14 409 Sucrose Transporter Gene Family AT1G66570 61.1 5.2e-144 508.1
Cla11g00703 . 14 409 Sucrose Transporter Gene Family AT1G66570 60.8 3.4e-143 505.4
Cla08g01190 . 31 424 Sucrose Transporter Gene Family AT1G66570 50.5 5.8e-111 398.3
Cla09g02134 . 1598 2045 Sucrose Transporter Gene Family AT2G02860 70.1 2.2e-182 635.6
Cla11g00966 . 8 479 Sucrose Transporter Gene Family AT5G06170 60.5 6.0e-162 567.8
Cla11g00703 . 8 479 Sucrose Transporter Gene Family AT5G06170 60.5 1.3e-161 566.6
Cla11g00966 . 17 479 Sucrose Transporter Gene Family AT5G43610 63.2 1.6e-170 596.3
Cla11g00703 . 17 479 Sucrose Transporter Gene Family AT5G43610 63.0 1.0e-169 593.6
Cla08g01190 . 31 455 Sucrose Transporter Gene Family AT5G43610 50.6 2.1e-119 426.4
Cla08g01190 . 18 455 Sucrose Transporter Gene Family AT1G09960 70.0 6.4e-183 637.5
Cla11g00703 . 8 489 Sucrose Transporter Gene Family AT1G09960 51.5 6.0e-133 471.5
Cla11g00966 . 8 489 Sucrose Transporter Gene Family AT1G09960 51.1 3.9e-132 468.8
Cla11g00703 . 14 495 Sucrose Transporter Gene Family AT1G71880 61.3 4.8e-170 594.7
Cla11g00966 . 14 490 Sucrose Transporter Gene Family AT1G71880 61.6 7.6e-168 587.4
Cla08g01190 . 31 455 Sucrose Transporter Gene Family AT1G71880 51.4 4.2e-118 422.2
Cla11g00703 . 17 484 Sucrose Transporter Gene Family AT1G71890 60.3 2.3e-164 575.9
Cla11g00966 . 17 484 Sucrose Transporter Gene Family AT1G71890 60.3 2.3e-164 575.9
Cla11g00703 . 14 495 Sucrose Transporter Gene Family AT1G71880 61.3 4.8e-170 594.7
Cla11g00966 . 14 490 Sucrose Transporter Gene Family AT1G71880 61.6 7.6e-168 587.4
Cla08g01190 . 31 455 Sucrose Transporter Gene Family AT1G71880 51.4 4.2e-118 422.2
Cla11g00966 . 14 484 Sucrose Transporter Gene Family AT1G22710 62.8 5.4e-174 607.8
Cla11g00703 . 14 484 Sucrose Transporter Gene Family AT1G22710 62.6 7.1e-174 607.4
Cla08g01190 . 32 455 Sucrose Transporter Gene Family AT1G22710 50.7 1.3e-122 437.2
Cla09g02134 . 1598 2045 Sucrose Transporter Gene Family AT2G02860 70.1 2.2e-182 635.6
Cla08g01190 . 18 455 Sucrose Transporter Gene Family AT1G09960 70.0 6.4e-183 637.5
Cla11g00703 . 8 489 Sucrose Transporter Gene Family AT1G09960 51.5 6.0e-133 471.5
Cla11g00966 . 8 489 Sucrose Transporter Gene Family AT1G09960 51.1 3.9e-132 468.8
Cla11g00703 . 17 484 Sucrose Transporter Gene Family AT1G71890 60.3 2.3e-164 575.9
Cla11g00966 . 17 484 Sucrose Transporter Gene Family AT1G71890 60.3 2.3e-164 575.9
Cla11g00966 . 17 479 Sucrose Transporter Gene Family AT5G43610 63.2 1.6e-170 596.3
Cla11g00703 . 17 479 Sucrose Transporter Gene Family AT5G43610 63.0 1.0e-169 593.6
Cla08g01190 . 31 455 Sucrose Transporter Gene Family AT5G43610 50.6 2.1e-119 426.4
Cla11g00966 . 14 409 Sucrose Transporter Gene Family AT1G66570 61.1 5.2e-144 508.1
Cla11g00703 . 14 409 Sucrose Transporter Gene Family AT1G66570 60.8 3.4e-143 505.4
Cla08g01190 . 31 424 Sucrose Transporter Gene Family AT1G66570 50.5 5.8e-111 398.3
Cla11g00966 . 14 479 Sucrose Transporter Gene Family AT2G14670 63.2 2.2e-172 602.4
Cla11g00703 . 14 479 Sucrose Transporter Gene Family AT2G14670 63.0 1.4e-171 599.7
Cla08g01190 . 31 455 Sucrose Transporter Gene Family AT2G14670 51.5 1.0e-121 434.1
Cla11g00966 . 8 479 Sucrose Transporter Gene Family AT5G06170 60.5 6.0e-162 567.8
Cla11g00703 . 8 479 Sucrose Transporter Gene Family AT5G06170 60.5 1.3e-161 566.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010988 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla08g01190 Cla_Chr08 FPKM 0.245192 0.0 3.854781 3.609975 0.345954 0.271307 0.459996 3.902542 3.413186 3.953568