Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01193 ATGGCTTTCCACTCAGCTTTCTTTCTTCTTTTGTTCTTCACTACTTTCTCCTTCTCTTCTTCTCAAGCTCTTACTACTTCTGCTACTAACAACCAATCTCAGTTCTTTTATCTCATGCAAAAGACTGCCTCAGGAGACTTCCTGTCTGATTGGGATCTTTCAGGAGGCAAATCGTTCTGCAGCTTCACTGGAATCCGGTGCAATGACCGAGGTCACGTTGTCGAGATTGATATCACTGGCCAGTCACTCTCTGGTAGCTTTCCGGAAGATGTATGTTCTTACTTGCCAGAGCTGAGAGTTCTTCGTCTCGCTGGTACCAGTTTCTACGGACGTTTTCCTTCAGGAATCACCAACTGCTCTCTCATTGAAGAACTTAACATGAGCTCTTTGTATCTCAATGGAAGTATCCCAGATTTATCGCAAATGAAACAACTGCGTGTACTCGACCTCTCGTACAATTTCTTTACTGGTGATTTTCCCATGTCGGTTTTCGACCTTGTTAATCTTGAGGTGCTGAATTTCAATGAGAACTACAACCTCAACTTATGGAAGTTGCCTGAGAAGATCTCCAGCCTGACGAAGCTGAAATCTATGGTGTTGACAACCTGTATGTTAGATGGTGAAATCCCCCGATCGATAGGGAACATGACGTCTCTTGTTGATCTTGAACTAAGTGGGAACTTTCTCAAGGGAGAGATTCCAAGAGAAATCTCCTTGCTGAAGAACTTGCAACAACTTGAACTCTATTACAATGAACTCACAGGAAACATACCAGAGGAGGTTGGAAATTTAACAGAGCTTGTGGACATGGACATGTCAGTGAACCTTTTGACAGGAGAGCTTCCAGAATCCATTTGTAAACTTCCTAAGCTTAAAGTTCTACAGATTTACAACAATAGCCTCACAGGAGAGATCCCAAGTGTACTAGCCAACTCAACAACACTCACTATGCTATCACTTTATGACAATTTTCTTACTGGACAGATTCCACAAAAGTTGGGGAAGTTCTCACCAATGGTTGTCCTTGACTTGTCGGAAAATCGCCTGTCGGGGCCATTGCCATTGGACATATGCAGAGGAGGGAAATTGCTATACTTTCTTGTCCTGCAAAATAGGCTTTCTGGAGAAATACCAGCAAGTTTTGCTGAATGCATATCACTTTTAAGGTTTAGGATTAGTTTCAATCAGTTGATAGGAACAATTCCTGAAGGGGTTTTGGGTCTCCCCCATGTTTCAATTATTGATGTTGCTCATAATAATCTCACTGGTTCCATTTCAAATTCTATCTCACAGGCAAGAAACTTGTCAGAGTTGTTCTTACAAGGAAACAGGATTTCTGGAGTTATACCACCAGAGATTTCAGGAGCAGCCAATCTGGTGAAGCTTGATCTCAGCAACAATCTTCTCTCGGGTCCAGTGCCATCGCAGATTGGCAATCTGATGAAACTAAATCAGGTGATGTTACAAGGAAACCAATTGGATTCTTCAATCCCCACTTCATTCACATCTTTAAAATCTCTCAACGTTCTTGATCTCTCGAACAACCGTTTATCCGGGAAAATCCCAGAAAGTTTGAGTGAATTGTTCCCAAGTTCTTTGAATTTTTCGAACAATCAACTATCGGGTCCAATTCCTTTGTCTTTGATCAAACAAGGATTAGCAGATAGCTTCTCCGGCAACCCAAATCTATGTGTTCCACCGGCGTATTTCATTTCACCTGATCAGAAATTCCCCATTTGTTCACATTTCTCCTTTAAAAAACGTCTAAATTTCATCTGGGGAATCGTTATTCCATTGCTCATCTTCTTCACCGGCGCCGTCCTGTTTCTAAAACGACGAATCACAACAAGAAAAACATCAGAGATCGAAAACGAACAAACCCTCTCCTCTTCATTCTTCCATTTGCAGAGCTTCGATCAAAGCAGGATTCTCGAAGCCATGGTGGAAAAGAACATTGTGGGACACGGTGGATCAGGAACAGTCTACAAAATTGAGCTCGGAAATGGAGAAATCGTCGCCGTGAAGAGGCTATGGAATCGAAGAGCGAAACATCTCTTCGACAAAGAATTGAAAACAGAGGTCGAAACCCTAGGAACAATAAGACACAAGAACATCGTGAAACTCTATAGCTACTTTTCAGGTCTAAATTGCAGCCTTCTGGTTTACGAATACATGCCAAACGGCAATCTATGGGACGCCCTTCATAAAGGGTGGATTCATCTTGATTGGCCCACGCGCCACCGCATCGCGGTGGGAATCGCACAAGGTCTCGCTTATCTCCACCACGATCTCTCGCCGCCGGTAATCCACAGAGATATCAAAACCACAAACATTCTATTAGATGCAAATTACCAACCCAAAGTTGCAGATTTCGGCATCGCCAAAGTTCTACAAGGAACTAAAGATTCAACCAACTCTGTAATCGCAGGGACATACGGCTATCTAGCCCCTGAATATGCATATTCATCAAAGGCAACAACCAAGTGCGATGTGTATAGCTTTGGAGTAGTGTTGATGGAGTTGATAACAGGGAAGAAGCCGATTGAAACAGAGTACGGTGAAAACAAGAACATAGTGTTCTGGGTTTCGAACAAAGTGGACACAAAAGAAGGGGTTCTTGAGATTCTTGACAAGAAACTAAAAGGGTTGTTCAGGGATGATATAATTAAGGCTCTGAGAATCGCCATTCGCTGTACTTACAAGAATCCAGTGCTTCGACCCGCCATGGGAGAGGTGGTTCAGCTTCTGCAAGAGGTGGATCCTTGCAAATTTGACCGTCCCTTTGAAAAAGGAGAAGATACCTTAATTACTACTAGCTACTTAGCTACTGGGCTCAAAAGCAAAATTTCATATACATATTTGGTTAACTTACAAGCAAGAGAAGAATATGGTGCAATAAAAAATTGGGATGGATTTAATGATTTGTAA 2928 42.32 MAFHSAFFLLLFFTTFSFSSSQALTTSATNNQSQFFYLMQKTASGDFLSDWDLSGGKSFCSFTGIRCNDRGHVVEIDITGQSLSGSFPEDVCSYLPELRVLRLAGTSFYGRFPSGITNCSLIEELNMSSLYLNGSIPDLSQMKQLRVLDLSYNFFTGDFPMSVFDLVNLEVLNFNENYNLNLWKLPEKISSLTKLKSMVLTTCMLDGEIPRSIGNMTSLVDLELSGNFLKGEIPREISLLKNLQQLELYYNELTGNIPEEVGNLTELVDMDMSVNLLTGELPESICKLPKLKVLQIYNNSLTGEIPSVLANSTTLTMLSLYDNFLTGQIPQKLGKFSPMVVLDLSENRLSGPLPLDICRGGKLLYFLVLQNRLSGEIPASFAECISLLRFRISFNQLIGTIPEGVLGLPHVSIIDVAHNNLTGSISNSISQARNLSELFLQGNRISGVIPPEISGAANLVKLDLSNNLLSGPVPSQIGNLMKLNQVMLQGNQLDSSIPTSFTSLKSLNVLDLSNNRLSGKIPESLSELFPSSLNFSNNQLSGPIPLSLIKQGLADSFSGNPNLCVPPAYFISPDQKFPICSHFSFKKRLNFIWGIVIPLLIFFTGAVLFLKRRITTRKTSEIENEQTLSSSFFHLQSFDQSRILEAMVEKNIVGHGGSGTVYKIELGNGEIVAVKRLWNRRAKHLFDKELKTEVETLGTIRHKNIVKLYSYFSGLNCSLLVYEYMPNGNLWDALHKGWIHLDWPTRHRIAVGIAQGLAYLHHDLSPPVIHRDIKTTNILLDANYQPKVADFGIAKVLQGTKDSTNSVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGKKPIETEYGENKNIVFWVSNKVDTKEGVLEILDKKLKGLFRDDIIKALRIAIRCTYKNPVLRPAMGEVVQLLQEVDPCKFDRPFEKGEDTLITTSYLATGLKSKISYTYLVNLQAREEYGAIKNWDGFNDL 975
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24848146 24852028 + ClCG08G011970.2 Cla08g01193 278848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01193 975 ProSiteProfiles Protein kinase domain profile. 647 929 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla08g01193 975 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 1 928 - -
Cla08g01193 975 Pfam Leucine Rich Repeat 507 528 IPR001611 GO:0005515
Cla08g01193 975 PRINTS Leucine-rich repeat signature 504 517 - -
Cla08g01193 975 PRINTS Leucine-rich repeat signature 459 472 - -
Cla08g01193 975 ProSitePatterns Serine/Threonine protein kinases active-site signature. 768 780 IPR008271 GO:0004672|GO:0006468
Cla08g01193 975 PANTHER RECEPTOR PROTEIN-TYROSINE KINASE CEPR1 1 928 - -
Cla08g01193 975 Gene3D Ribonuclease Inhibitor 299 574 IPR032675 -
Cla08g01193 975 Gene3D Phosphorylase Kinase; domain 1 631 724 - -
Cla08g01193 975 SMART serkin_6 647 923 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla08g01193 975 SMART LRR_typ_2 288 312 IPR003591 -
Cla08g01193 975 SMART LRR_typ_2 433 456 IPR003591 -
Cla08g01193 975 SMART LRR_typ_2 240 264 IPR003591 -
Cla08g01193 975 SMART LRR_typ_2 504 528 IPR003591 -
Cla08g01193 975 SMART LRR_typ_2 166 192 IPR003591 -
Cla08g01193 975 SUPERFAMILY L domain-like 257 573 - -
Cla08g01193 975 Gene3D Ribonuclease Inhibitor 181 298 IPR032675 -
Cla08g01193 975 Gene3D Ribonuclease Inhibitor 34 180 IPR032675 -
Cla08g01193 975 SUPERFAMILY RNI-like 72 351 - -
Cla08g01193 975 SUPERFAMILY Protein kinase-like (PK-like) 625 916 IPR011009 -
Cla08g01193 975 ProSiteProfiles Leucine-rich repeat profile. 506 528 IPR001611 GO:0005515
Cla08g01193 975 Gene3D Transferase(Phosphotransferase) domain 1 725 929 - -
Cla08g01193 975 Pfam Protein kinase domain 649 858 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla08g01193 975 ProSitePatterns Protein kinases ATP-binding region signature. 653 675 IPR017441 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g00874 Cla-Chr8:21166480 Cla08g01193 Cla-Chr8:24848146 0 dispersed
Cla08g01193 Cla-Chr8:24848146 Cla11g01457 Cla-Chr11:28242619 0 dispersed
Cla06g01234 Cla-Chr6:25597635 Cla08g01193 Cla-Chr8:24848146 2.58E-12 transposed
Cla06g01712 Cla-Chr6:30677277 Cla08g01193 Cla-Chr8:24848146 3.54E-06 transposed
Cla01g01761 Cla-Chr1:32517304 Cla08g01193 Cla-Chr8:24848146 0 wgd
Cla11g01456 Cla-Chr11:28223851 Cla08g01193 Cla-Chr8:24848146 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80751 PF00069 Pkinase 8.20E-49 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01193 - - csv:101220145 1692.94