Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01196 ATGAGGTTGAAGGAAGATTTGCCTTACACCGCCAATGAAACCGCCCCTGAAATGGACGAAACCATGTCGCTCCAGTCCAGGTTTTCGAATGCCCACCAAAGGAAGGTGGTTGTTGTTGGTTATGCTCTTACCTCCAAGAAGACCAAGAGTTTCATGAAGCCTAAGCTTGAAGGATTAGCTAGGAACAAGGGTATATTGTTTGTTGCCATTGATCAAAACAGACCTCTGTCGGATCAGGGTCCTTTTGACATTGTTCTACACAAGTTGTCAGGAAAGGAGTGGCACGGGTTCTCTTACGTCATGAATCATGACTCAGTAGTTGAGGTCGTGGCCTTAAGGTTCCAACAAGTGAGGATGTCTCCACTTCTTACCACATGGCTGATTTGTTCAGGATTAGGTTATGTAGGTCACCTACTGGTACTCGTCCTCATCTCAACTGACTACAGGCAAACACACCCAGAAGTGACTGTCCTGGATCCTCCAGATGCGATACAGCATTTACACAATCGCCAGTCTATGCTTCAAGCAGTTGCTGACATGGACTTATGTGAATCCTATGGCAAAGTAGGTGTTCCAAAACAATTAGTCATAAAGAAAGATGCATCGTCCATATCTGATGCAGTGGTGAACATCGGGCTAAAACTTCCTCTTGTTGCTAAACCGTTGGTTGCTGATGGAAGTGAAAAGTCCCATCAATTATCTTTAGCTTATGATAAGTACTCCCTCCAAAAGCTTGAGCCTCCTCTTGTTCTCCAGGAGTTTGTCAACCATGGAGGCGTCATGTTTAAGGTCTTCATCGTTGGTGAAGCTATAAAAGTGGTCAGACGTTTTTCTTTACCAAATGTCAGCATGTGGGAGGTATTGAAAAATGCTGGCATCTATCATTTCCCAAGAGTTTCTCATGCTGCAGCATCTGCTGATGATGCTGACCTAGATCCTTGTGTTGCTGAACTTCCTCCGCGGCCTCTATTAGAGAGACTAGCAAAGGAACTCAGACGTAGATTGGGGCTTCGTTTATTCAACCTGGACATTATTCGAGAGTATGGAACTAGAGATCACTATTATGTCATTGATATCAACTACTTCCCTGGGTATGGGAAAATGCCGGAATACGAGCACATATTCACAGACTTTCTGTTGGGCCTGGTGCAGAGTAAGTACAAGAAGAGAACAACTTACTAG 1182 44.42 MRLKEDLPYTANETAPEMDETMSLQSRFSNAHQRKVVVVGYALTSKKTKSFMKPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLSGKEWHGFSYVMNHDSVVEVVALRFQQVRMSPLLTTWLICSGLGYVGHLLVLVLISTDYRQTHPEVTVLDPPDAIQHLHNRQSMLQAVADMDLCESYGKVGVPKQLVIKKDASSISDAVVNIGLKLPLVAKPLVADGSEKSHQLSLAYDKYSLQKLEPPLVLQEFVNHGGVMFKVFIVGEAIKVVRRFSLPNVSMWEVLKNAGIYHFPRVSHAAASADDADLDPCVAELPPRPLLERLAKELRRRLGLRLFNLDIIREYGTRDHYYVIDINYFPGYGKMPEYEHIFTDFLLGLVQSKYKKRTTY 393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24895517 24900767 + ClCG08G012000.2 Cla08g01196 278851

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01196 393 PANTHER INOSITOL-TETRAKISPHOSPHATE 1-KINASE 2 146 390 - -
Cla08g01196 393 PANTHER INOSITOL-TETRAKISPHOSPHATE 1-KINASE 2 25 96 - -
Cla08g01196 393 PIRSF ITPK 16 117 IPR008656 GO:0000287|GO:0005524|GO:0032957|GO:0047325|GO:0052725|GO:0052726
Cla08g01196 393 PIRSF ITPK 143 393 IPR008656 GO:0000287|GO:0005524|GO:0032957|GO:0047325|GO:0052725|GO:0052726
Cla08g01196 393 PANTHER INOSITOL-TETRAKISPHOSPHATE 1-KINASE 146 390 IPR008656 GO:0000287|GO:0005524|GO:0032957|GO:0047325|GO:0052725|GO:0052726
Cla08g01196 393 PANTHER INOSITOL-TETRAKISPHOSPHATE 1-KINASE 25 96 IPR008656 GO:0000287|GO:0005524|GO:0032957|GO:0047325|GO:0052725|GO:0052726
Cla08g01196 393 SUPERFAMILY Glutathione synthetase ATP-binding domain-like 160 367 - -
Cla08g01196 393 Pfam Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain 185 380 IPR040464 -
Cla08g01196 393 Gene3D - 160 364 - -
Cla08g01196 393 Gene3D - 22 116 - -
Cla08g01196 393 Pfam Inositol 1,3,4-trisphosphate 5/6-kinase pre-ATP-grasp domain 38 96 IPR041429 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01196 K00913 ITPK1; inositol-1,3,4-trisphosphate 5/6-kinase / inositol-tetrakisphosphate 1-kinase [EC:2.7.1.159 2.7.1.134] - csv:101206636 590.497
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g01196 Cla-Chr8:24895517 Cla09g01107 Cla-Chr9:11990514 6.82E-73 dispersed
Cla08g01196 Cla-Chr8:24895517 Cla10g00145 Cla-Chr10:1503712 1.89E-79 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g583 . . . . . . . . Cmo05g00598 Cmo12g00187 . . . Car12g00213 Sed01g1243 . Cpe07g00196 Bhi04g00887 Tan02g2526 Cmetu03g1186 . . . . Cla08g01196 Cam08g1658 Cec08g1235 Cco08g1354 Clacu08g1355 . Cre08g1142 . . Cone17ag1147 Cone20ag0580 . . . Cme03g01769 Blo17g00078 . . Bda13g01339 . Bpe14g00508 . Bma02g00094 . . . Cma12g00232 Cma05g00573 Car05g00519 . Cpe11g00502 . . . . . . . . . . . . . . . Lsi08g01058 Csa02g02240 Chy03g01276 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003608 3 3 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 4 4 1 47
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla08g01196 Cla_Chr08 FPKM 2.384765 2.398807 10.881441 11.628983 14.422945 13.468188 12.271332 4.097748 3.71531 3.351929