Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01198 ATGATGGGAACAAGTTTCAGGCCAAATCTCAAGTGGGGTTTTCAAATTCAGACTCATTCCCGCAAGACTTCCCCATCGAAGCTTTCTCCATATGCCTCTAAAGGCAGGGAAGCTGCCTTTAATTCCGGAAAACTTTCCTTCTTCTCCACAATCTGTGAGGAAGGAGAGTCTATCTCTAGAGAAACCTTGAAAACATACACTTGCTTGTCTGAAGCTCCACAAACCTCATCTGGTGATCTGTTAAATGTGGAAGAGATAGAGATGAACAGTGGGTCAAAGTCATTCACTCCTTTGCATTACGGGATAAAAAATACTTGGCCATCCAAGGTAGAGGACAATTTTTCTTCCTGTACGAGCTTGCCTAGTGGCAAGGCATCACCTTTTGGCATGTTAATGGAAAACCTTGATGTTTTGGAGGAAACTTTTACTGAATCAGGCATGCTAGGCTTGGAAAGAGATATTGTGCTGCAACTAACAAAACTTGGAGCTTTGGAGTTTTTCAATACCTGTCTATCTAGGACGCTTAAAACTTCAAGTTTTCATGATTTGTCAGACTTGCCCATTGAGGATGGTGGAGATCATAATGGAAACCAGAAAACCAATGACTGGCATGATGACATCATAGTTTACTCTGGGAAAAGAGCAGGAAGAAGATCAGTAAAAAAGAGAGCAACGGATAATGCTGATAAAGTTGCTTCCCGGCCGCTAGCTACAAGAGCTGCTAAAGAAAAAATCCATGGTTCGACTATATTTTCGAGAAAAAAAGCATCTAATTCTAGAAAAAGAAGACTGATAGTTGCTAGACATGAAGCTGAAATGTCCACGGGGGCTAAGGTAGTTGCAAATTTGGAAAGAATTAGAGAAACTTTAGAAAAGGAATCTGGAAAAATAGCAAGCATGAGTTGTTGGGCCGATGCTGCTGGCGTTGATATAAAGGACCTACAAAAACAGTTACAATTTGGTTGGTTCTGCCAGGATGAGCTTTTAAGGAGCACTAATTCATTAGTTCTATTCCTTGCAAAGAAATACCGATGCTCTGGGTTACCAATGGAGGACTTGGTTCAGGCAGGAGCCCTTGGTGTGCTGCAAGGTGTGGAAAGGTTTGACCCTAAAAGGGGCTTTAGATTCTCAACATATATTCAGTACTGGATAAGGAAATCAATGTCAAGAGTTGTGGCACGGAATTCAAGGGGAATTCAAATTCCATGGTCATTAACCAAGGCAATCAATCAGATACAAAAAGCACGAAAAATGTTGAACAATGGTGGTAGGAGATATTCGGATGACGATATAGCGAAGGCTACTGGTCTTCCTTTGGCCAAGGTTAGAGTTGCCAGCAACTGTTTAAAAGTTGTGGGTTCGGTTGATCAGAAGATGGGTGATGGACTAAATATGAAATATATGGAATTTACAGCTGATATGTCAATACAGAGCCCAGAAGAGACTGTGAAGCGAAAACTAATGAAGGAAGACATCTTTAATGTTCTTGAAGGCTTGGAATCAAGGGAGAGGCAAGTCCTGGTGCTTCGATACGGACTTATGGATTTCCAACCCAAGTCGCTCGAGGAAATTGGAAAACTTCTGCATCCATTATTTGGATTGATCTACTTCTTTCAAGCTTGGGAACCTCCGGTCTTTTCAAAACTTGCAGCAGGCCAAAGAAGCCAAGACGTTCACATTGCGCTTTCGGGCCATACTAATGAAGTTGGTTACAATGAGCATATCTCAATCCTCAACGATTTCCGTCAAAGGTGTATGTCTGGATGA 1767 41.71 MMGTSFRPNLKWGFQIQTHSRKTSPSKLSPYASKGREAAFNSGKLSFFSTICEEGESISRETLKTYTCLSEAPQTSSGDLLNVEEIEMNSGSKSFTPLHYGIKNTWPSKVEDNFSSCTSLPSGKASPFGMLMENLDVLEETFTESGMLGLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDLSDLPIEDGGDHNGNQKTNDWHDDIIVYSGKRAGRRSVKKRATDNADKVASRPLATRAAKEKIHGSTIFSRKKASNSRKRRLIVARHEAEMSTGAKVVANLERIRETLEKESGKIASMSCWADAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKMLNNGGRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADMSIQSPEETVKRKLMKEDIFNVLEGLESRERQVLVLRYGLMDFQPKSLEEIGKLLHPLFGLIYFFQAWEPPVFSKLAAGQRSQDVHIALSGHTNEVGYNEHISILNDFRQRCMSG 588
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24912807 24917278 + ClCG08G012020.2 Cla08g01198 278853

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01198 588 PRINTS Major sigma-70 factor signature 352 365 IPR000943 GO:0003700|GO:0006352|GO:0006355
Cla08g01198 588 PRINTS Major sigma-70 factor signature 520 535 IPR000943 GO:0003700|GO:0006352|GO:0006355
Cla08g01198 588 PRINTS Major sigma-70 factor signature 499 511 IPR000943 GO:0003700|GO:0006352|GO:0006355
Cla08g01198 588 PRINTS Major sigma-70 factor signature 376 384 IPR000943 GO:0003700|GO:0006352|GO:0006355
Cla08g01198 588 Pfam Sigma-70, region 4 495 528 IPR007630 GO:0003700|GO:0006352|GO:0006355
Cla08g01198 588 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 267 397 IPR013325 GO:0003700|GO:0006352|GO:0006355
Cla08g01198 588 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 11 529 - -
Cla08g01198 588 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 459 528 IPR013324 -
Cla08g01198 588 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 326 528 IPR014284 GO:0003700|GO:0006352|GO:0006355
Cla08g01198 588 PANTHER RNA POLYMERASE SIGMA FACTOR SIGC 11 529 - -
Cla08g01198 588 Gene3D - 400 529 - -
Cla08g01198 588 Pfam Sigma-70 region 3 408 482 IPR007624 GO:0003700|GO:0006352|GO:0006355
Cla08g01198 588 Pfam Sigma-70 region 2 332 397 IPR007627 GO:0003700|GO:0006352|GO:0006355
Cla08g01198 588 Gene3D - 213 397 - -
Cla08g01198 588 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 401 473 IPR013324 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01198 K03093 sigI; RNA polymerase sigma factor - csv:101206167 913.294
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g00051 Cla-Chr6:553608 Cla08g01198 Cla-Chr8:24912807 4.01E-52 dispersed
Cla08g01198 Cla-Chr8:24912807 Cla10g01160 Cla-Chr10:26163080 1.65E-33 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g42 . . . . . . . . . . . . . Car12g00215 Sed01g1245 Cpe07g00198 . Bhi04g00884 Tan02g2529 . . Hepe10g0389 . Lcy13g1443 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla08g01198 Cam08g1660 Cec08g1237 Cco08g1356 Clacu08g1357 . Cre08g1144 . Csa02g02242 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007971 0 2 1 0 0 1 2 1 1 1 1 1 2 1 1 0 1 2 2 1 1 1 1 1 1 0 1 3 5 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla08g01198 Cla_Chr08 FPKM 7.37117 9.640131 13.282805 14.391573 9.864079 11.139921 10.415811 17.719063 18.500019 17.640894