Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01205 ATGAGATCTCTAAATGGGTCCAAGGCATCTACTTTCATATACACTTCTCCATCTTTCCCTTCGTCTTACTCTAGTTTTCTTGCAGAAACCAATCCTACCAGAATAACCATTAGAAAGAAGCATCAAAAAATGTCCAGAATTTCACTGCCATTTCTCACAACCTTGTTCCCTGTTTACCTCTTCTACTTCATCTCCATACAATTCAATGTTGGTTCACAAACTGTCAATGTAGACCAAGCCATCTTGCTTGATCTCAAAGAACAATGGGGGAATCCACCCTCTCTCTGGTTATGGAACGCGTCTTCCTCGCCCTGTGATTGGCCGGAGATCATCTGTAGAGACGGTACGGTCACTGGAATCTCTCTGAGAAACAAGAACATAACTGGGAAAGTTCCCATTGCCATCTGTAGCTTGCAAAATCTCACTGTGCTTGATCTTTCATGGAACTACATCCTCGATGAGTTCCCAGAAGTTCTATACAATTGTTCCAAGCTCAAGTATCTTGATCTATCAGCAAACTATTTTGTGGGTCCAATACCCCAAGACGTAGAGCAGCTTCGAACTCTGCAGTACATGGACCTTAGTGCCAACAACTTCTCGGGCGATTTTCCAGCGGCGCTAGGACGGTTGTCAGATTTGAGAACTTTGAACATTTACAGAACTCAATGCAATGGTACATTGCCAGCTGAAATTGGTAACTTGTCCAATCTTGAAACTTTGAGCATGGCATATAACACTTTGCTTGTCCCATCGCCAATACCACAAGATTTCAAGAAACTGAAGAAGTTGAAGTATATGTGGATGACAAAATCCAATTTGATAGGTGAAATCCCAGAAAGCTTTTCGGATCTTTTGAGCCTTGAACACTTGGATTTATCCAGTAACAACTTGATAGGCTCTATTCCTGCTGGGTTGTTCTCTTTGCAGAATTTAAGCAACTTATTTCTATACCAAAATCGATTATCTGGCGAGATACCCAAGTCAATCCGAGCATCAAATTTACTCAATGTTGACCTCTCTGCAAACAATTTACGCGGCATGATCCCTGAAGATTTTGGGAAGTTAAAAAAGTTGCAGGTCCTGAACTTGTTTGCAAATCACTTGTCTGGTGAGATTCCAGAAAGTTTAGGCCTAATACCTACACTGAAAGGTTTTCGTGTATTCAACAACAGCTTAACTGGGAGTTTGCCACAAGAATTGGGTCTGCACTCAAATCTGGAAGCATTGGAGGTTTCAATGAATAAACTAAGTGGTTCCTTGCCTGAACATCTCTGTAAAAATGGCGTCTTACAGGGAGTAGTTGCCTTTTCCAATAACCTTAGTGGCGAATTGCCAAAAGGGCTTGGCAATTGTAGGACCCTACGCACAGTCCAGCTCTCAAACAACAACTTTTCTGGCGAAATTCCTCGAGGGCTTTGGACTACTTTCAATCTATCAAGCATAATGTTAGATGGAAATTCATTCTCAGGCGAGTTACCAGATAGCTTGTCTTGGAATCTCTCGAGACTCACAATAAATAACAACAAATTTTGGGGTCAAATTCCTCAAAATGTGTCTGCTTGGCAAAACTTGATTGTGTTTGAGGCAAGCAACAATCTGCTTTCTGGTAAGTTCCCTGATGGATTGACAAGTCTTCCTCGTCTTACCACACTCGTATTGAGTGGCAATCAACTCTCGGGCGAACTTCCATCGACAATTGGTTCGTGGAGATCGTTGAATACTCTAAATCTCTCAAGAAATGAACTTTCAGGCCATATTCCTGCAGCGTTTGGTTCTCTCCCTAACCTCCTTTACCTGGATTTATCAGGTAACAACTTCACTGGTGAAATGCCACCTGAAATTGGCCACTTAAGACTGGCTTCCCTCAACTTGTCTTCCAATCAGCTTTCAGGGAAAATCCCAGATGAGTATGAGAATATAGCATATGGAAGGAGTTTTTTGAACAACCCCAAACTATGTACCGCCACCGGTGTACTTGATCTTCCGAGCTGTTACTCTAGACAAAGAGATTCAAAAGATCAGTCCTCTAAATATCTTCCCCTCATTCTAGCTCTCACTGTTACCTTGCTCATGATTGCTTTACTGTGGATTTCCCTCCTATATAAAAATTATTGCAAAAAGGATGAAAGATGCCACCCTGACACATGGAAGCTAACTTCATTCCAGAGATTGGACTTTACGGAAACAAATATCTTGTCGAACTTGACAGAAACTAATCTGATTGGAAGCGGTGGATCCGGCAAAGTGTACTGCATAGACATCAACCATGCTGGTTATTATGTTGCTGTCAAAAGGATTTGGAGTAACAATAAGTTGGATGAAAAACTTGAGAAAGAATTTCAAGCAGAAGTTCAAATACTAGGCTCAATTCGGCATTCAAATATAGTGAAGTTGTTATGCTGCGTCTGGAATGAGAATTCAAAGCTCTTAGTCTATGAATACATGGAAAATCAGAGCCTAGATAGGTGGCTTCATAGAAAGAAGAAAAGGTTAACAGCAGCTGCAATGGATTTTGTTGAACAATATGTCTTAGACTGGCCGAGGAGGTTGCAGATTGCTATTGGAGCTGCACAAGGCCTCAGTTATATGCACCATGATTGCTCTCCACCAATCATTCATCGAGATGTGAAGTCGAGTAACATCTTATTAGACCGGGAATTCCAGGCAAGGATAGCAGATTTTGGGCTGGCCAAGATGCTGGCCAGGCAAGGAGAGGCCCACACCATGTCTGCAATAGCAGGATCTTTCGGCTACATAGCCCCAGAGTATGCCTACACAACCAAAGTCAATGAGAAGATTGATGTCTATAGCTTTGGGGTTGTACTCCTGGAACTTACAACTGGAAGAGAACCTAACTGTGGAGATGAGCACACAAGCCTAGCAGAATGGGCATGGCAGCACTATAGTGAGGGAAAGCCCATTATTAATGCTCTTGCTGAGGAAATAAAAAACCCATGCAATTTGGATGAGATGACCACTCTATTCAAACTTGGTCTAATTTGTACAAGCACGTTACCTGAAATACGACCTTCGATGAAGGAAGTTCTGCATATTCTACGCCAATGCAGCCCTCCAGAAGCTTGTGATAGGAGAAAGCATGCCATTGAATATGATGCTGTTCCCCTCCTTGGCACTCCTCTATGA 3144 42.21 MRSLNGSKASTFIYTSPSFPSSYSSFLAETNPTRITIRKKHQKMSRISLPFLTTLFPVYLFYFISIQFNVGSQTVNVDQAILLDLKEQWGNPPSLWLWNASSSPCDWPEIICRDGTVTGISLRNKNITGKVPIAICSLQNLTVLDLSWNYILDEFPEVLYNCSKLKYLDLSANYFVGPIPQDVEQLRTLQYMDLSANNFSGDFPAALGRLSDLRTLNIYRTQCNGTLPAEIGNLSNLETLSMAYNTLLVPSPIPQDFKKLKKLKYMWMTKSNLIGEIPESFSDLLSLEHLDLSSNNLIGSIPAGLFSLQNLSNLFLYQNRLSGEIPKSIRASNLLNVDLSANNLRGMIPEDFGKLKKLQVLNLFANHLSGEIPESLGLIPTLKGFRVFNNSLTGSLPQELGLHSNLEALEVSMNKLSGSLPEHLCKNGVLQGVVAFSNNLSGELPKGLGNCRTLRTVQLSNNNFSGEIPRGLWTTFNLSSIMLDGNSFSGELPDSLSWNLSRLTINNNKFWGQIPQNVSAWQNLIVFEASNNLLSGKFPDGLTSLPRLTTLVLSGNQLSGELPSTIGSWRSLNTLNLSRNELSGHIPAAFGSLPNLLYLDLSGNNFTGEMPPEIGHLRLASLNLSSNQLSGKIPDEYENIAYGRSFLNNPKLCTATGVLDLPSCYSRQRDSKDQSSKYLPLILALTVTLLMIALLWISLLYKNYCKKDERCHPDTWKLTSFQRLDFTETNILSNLTETNLIGSGGSGKVYCIDINHAGYYVAVKRIWSNNKLDEKLEKEFQAEVQILGSIRHSNIVKLLCCVWNENSKLLVYEYMENQSLDRWLHRKKKRLTAAAMDFVEQYVLDWPRRLQIAIGAAQGLSYMHHDCSPPIIHRDVKSSNILLDREFQARIADFGLAKMLARQGEAHTMSAIAGSFGYIAPEYAYTTKVNEKIDVYSFGVVLLELTTGREPNCGDEHTSLAEWAWQHYSEGKPIINALAEEIKNPCNLDEMTTLFKLGLICTSTLPEIRPSMKEVLHILRQCSPPEACDRRKHAIEYDAVPLLGTPL 1047
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24958351 24962693 - ClCG08G012090.2 Cla08g01205 278860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01205 1047 Pfam Leucine Rich Repeat 286 305 IPR001611 GO:0005515
Cla08g01205 1047 CDD STKc_IRAK 741 1019 - -
Cla08g01205 1047 Gene3D Phosphorylase Kinase; domain 1 704 814 - -
Cla08g01205 1047 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 58 1036 - -
Cla08g01205 1047 Gene3D Ribonuclease Inhibitor 75 250 IPR032675 -
Cla08g01205 1047 PANTHER KINASE FAMILY WITH LEUCINE-RICH REPEAT DOMAIN-CONTAINING PROTEIN 58 1036 - -
Cla08g01205 1047 SUPERFAMILY Protein kinase-like (PK-like) 724 1019 IPR011009 -
Cla08g01205 1047 SMART LRR_typ_2 138 162 IPR003591 -
Cla08g01205 1047 SMART LRR_typ_2 355 379 IPR003591 -
Cla08g01205 1047 SMART LRR_typ_2 234 259 IPR003591 -
Cla08g01205 1047 SMART LRR_typ_2 593 617 IPR003591 -
Cla08g01205 1047 SMART LRR_typ_2 545 569 IPR003591 -
Cla08g01205 1047 SMART LRR_typ_2 284 308 IPR003591 -
Cla08g01205 1047 ProSiteProfiles Leucine-rich repeat profile. 286 309 IPR001611 GO:0005515
Cla08g01205 1047 Pfam Protein kinase domain 737 1017 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla08g01205 1047 SUPERFAMILY L domain-like 85 425 - -
Cla08g01205 1047 SMART serkin_6 735 1018 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla08g01205 1047 Pfam Leucine rich repeat 570 629 IPR001611 GO:0005515
Cla08g01205 1047 Pfam Leucine rich repeat 499 558 IPR001611 GO:0005515
Cla08g01205 1047 Gene3D Ribonuclease Inhibitor 251 382 IPR032675 -
Cla08g01205 1047 Gene3D Ribonuclease Inhibitor 383 667 IPR032675 -
Cla08g01205 1047 ProSitePatterns Protein kinases ATP-binding region signature. 741 764 IPR017441 GO:0005524
Cla08g01205 1047 ProSitePatterns Serine/Threonine protein kinases active-site signature. 871 883 IPR008271 GO:0004672|GO:0006468
Cla08g01205 1047 SUPERFAMILY RNI-like 332 638 - -
Cla08g01205 1047 Gene3D Transferase(Phosphotransferase) domain 1 815 1038 - -
Cla08g01205 1047 ProSiteProfiles Protein kinase domain profile. 735 1020 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00748 Cla-Chr3:9083328 Cla08g01205 Cla-Chr8:24958351 5.16E-76 dispersed
Cla08g01205 Cla-Chr8:24958351 Cla10g00774 Cla-Chr10:14594346 0 dispersed
Cla03g01548 Cla-Chr3:31134582 Cla08g01205 Cla-Chr8:24958351 0 transposed
Cla11g01478 Cla-Chr11:28401275 Cla08g01205 Cla-Chr8:24958351 7.35E-141 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80752 PF00069 Pkinase 2.90E-45 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01205 K00924 - csv:101219431 1845.48