Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01206 ATGGACTCAAACCTTTTGCAACGTCAAGTTGCCTACACGAAGAGGTGCTTTTTTGAGCAGGGTTATCTTGATCGTGATCAATTCACTCAGCTTGAAGAACTGCAAGATGATGCTAACCCGAATTTTGCTGAAGAAATTGTGTCTTTATTCTACAATGATTCAGCCAGACTCATACGGAGCATTGAACAAACCATGGTCAGTAAGCCAACGGATTTTGAAAAGCTTGACAACTACATGCACCAGTTCAAGGGCAGTAGCTCAAGCATTGGAGCCAATAGGGTGACTGATGCATGCTCACAGTTTAGAGAATACTGCTTGGCAGGCAATCTTGAAGGATGCATAAGGAGTTTCCAGGAAGTGAAACAAGAGCATGAAATTCTGAAGAAGAAGCTTGATACCTATTTCCAGCTAGTTAGACAAGCTGGGAAAGGTTGA 435 42.53 MDSNLLQRQVAYTKRCFFEQGYLDRDQFTQLEELQDDANPNFAEEIVSLFYNDSARLIRSIEQTMVSKPTDFEKLDNYMHQFKGSSSSIGANRVTDACSQFREYCLAGNLEGCIRSFQEVKQEHEILKKKLDTYFQLVRQAGKG 144
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24969192 24971914 - ClCG08G012100.2 Cla08g01206 278861

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01206 144 CDD HPT 44 123 IPR008207 GO:0000160
Cla08g01206 144 ProSiteProfiles Histidine-containing phosphotransfer (HPt) domain profile. 39 141 IPR008207 GO:0000160
Cla08g01206 144 SUPERFAMILY Histidine-containing phosphotransfer domain, HPT domain 19 140 IPR036641 GO:0000160
Cla08g01206 144 PANTHER - 3 142 IPR045871 GO:0000160|GO:0009927|GO:0043424
Cla08g01206 144 PANTHER PSEUDO HISTIDINE-CONTAINING PHOSPHOTRANSFER PROTEIN 2-LIKE 3 142 - -
Cla08g01206 144 Pfam Hpt domain 45 127 IPR008207 GO:0000160
Cla08g01206 144 Gene3D HPT domain 1 143 IPR036641 GO:0000160
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01206 K14490 AHP; histidine-containing phosphotransfer peotein - csv:101219195 278.485
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g01265 Cla-Chr7:29749580 Cla08g01206 Cla-Chr8:24969192 4.19E-57 dispersed
Cla08g01206 Cla-Chr8:24969192 Cla05g00602 Cla-Chr5:5502008 1.43E-23 dispersed
Cla08g01206 Cla-Chr8:24969192 Cla09g00017 Cla-Chr9:209387 1.40E-52 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g10 . . . . . . . . . . . . . . Sed02g1237 Cpe07g00202 . Bhi04g00872 Tan02g2543 Cmetu02g0241 . . . . . . . . . . . . . . . . . . . . . . Bda13g01323 . . . Bma02g00080 . . . . Cma12g00238 . . . . . . . . . . . Cla08g01206 Cam08g1667 Cec08g1245 Cco08g1363 Clacu08g1365 . Cre08g1150 . Csa02g02251 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001289 2 6 0 1 2 1 3 1 1 1 2 1 3 3 3 4 1 3 3 1 3 2 2 3 2 3 3 7 5 3 75
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla08g01206 Cla_Chr08 FPKM 23.165699 25.467451 18.592321 19.646461 13.979662 16.693699 14.442183 32.169178 31.122372 31.770449