Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01207 ATGGAAGACCAAAGGTTGTTGGAGAGAGAGAGGCACCAGATCGAGCAGATTCTTCAGCTTGATAATGAGGAATTGCAAGTTGAAGAAGTTGACTACCTTCCTGACTCCGATGATGACAATGATCGCGATGCTATTAATGGTCATGGTGGTACTGAGGCCTTTGCTGAATTTACTTTCAATTCCTCCTTGGCATCTTTGCATACGTATCTTGGTGAGGTTGAGGATGCTCATCACAGAATGGCTTTCTTGGATGGTGGTGCCATCTTGAACCTCCCTGTATTTTATCTTGAAGGTGTTGTATTGTTCCCAGAAGCTACTCTACCTCTCAGGGTGATACAATCAAATTTTATTGCTGCCATTGAGAGAGTATTGACTCACTTTGACACTCCTAATACCATAGGTGTGGTTCACGTCTGCTTGGATTCTGATAATGAAAGACTACGTTTTGCGAATATTGGGACAACTGCAGAGATTCGGCAGTTTCGAAGGTTGGAAGATGGTTCACTTAATGTTCTTGCTAGAGGGAAGCAACGTTTTCGTCTTAGACGACGTTGGATTGATGTTGAAGGAGTGCCATGTGGAGAAGTTCAAATTATCCAGGAAGATTTGCCATTAAGGACTCCACGGGATGCTTTTGGAGAATTGGCTCCAAGGAGTACTGTTCAGCGGCACAGTCTCTCATGTGCATTGGCTTCATATACTTCTTGCTCTAGATCACTTACATCCAGGGATGAGGAGAATGATTCCGCCTCTAATTCAGAAGAAAGCTTTGAACGTGAGCTTTCATTGAGAGAGAGGAAAATCCACCAAGCAGCCATTGATTCCAGTGAATCTTGTAGCGATGAGGAGATATCTGGTTCAGAGGCAGAACACCAACATGCGATGTCACATCTAAATGATTCTGATTCTTTAGGGTCAATGCAATCTGACTGTGAGAAGGAAAATGAGAAACCTGCCTCTGACATAGGAAAAAGTTCCACATCAGCTGGGGAATCTAGCGGGAGGAAAGAATTCAAAAGATGTCGAAGAAACTCAAGTTTTAATCTGATGCACAGGGATTCAAGAGCATTTTGGCCATATTGGGTTTATTCAATGTATGATTCATATTGTCTTGCTCAAAAAGCAGCAGCTATGTGGAAGCAGATAGTGGGGGTACCAAACATGGATGGATTTGTGAAGAATCCAGACATCTTATCCTTCTATATTGCTAGTAAGATTCCAGTTTCTGAATCTACTAGACAGGAGCTCTTGGAGATTGATGGCATTTCATATAGATTGCGTCGGGAAATTGAGTTACTCAAATCTATTGATATCATCCAATGTAAAAACTGCAAGACAGTTATAGCCAAGCGCAGTGATATGTTGGTGATGTCTACTGAAGGTCCGCTCAGTGCTTATGTGAACCCCCATGGTTATGTGCATGAAATAATGACTCTTTATAGAGCAAATGGCTTAGCACTTAGAGGACGAGCTGAGACAGAATACAGTTGGTTCCCTGGGTATGAAATTGATCTAACTTCTCTCTTTGAACCTGCGAGCATTAGTTCCCACTTGAATCTTTATGGGAGGAGGAAGAATGTGGTTTCTAGGTATGCGTGGACAATCTCAATCTGTGCAACTTGCGAAACTCAATTAGGATGGCTTTTTACTGCAACAAACAGGAATCTGAAACCCAGATCATTTTGGGGAATACGAAGTTCCCAGTTAGCTGATGCTACACGTTAA 1725 42.32 MEDQRLLERERHQIEQILQLDNEELQVEEVDYLPDSDDDNDRDAINGHGGTEAFAEFTFNSSLASLHTYLGEVEDAHHRMAFLDGGAILNLPVFYLEGVVLFPEATLPLRVIQSNFIAAIERVLTHFDTPNTIGVVHVCLDSDNERLRFANIGTTAEIRQFRRLEDGSLNVLARGKQRFRLRRRWIDVEGVPCGEVQIIQEDLPLRTPRDAFGELAPRSTVQRHSLSCALASYTSCSRSLTSRDEENDSASNSEESFERELSLRERKIHQAAIDSSESCSDEEISGSEAEHQHAMSHLNDSDSLGSMQSDCEKENEKPASDIGKSSTSAGESSGRKEFKRCRRNSSFNLMHRDSRAFWPYWVYSMYDSYCLAQKAAAMWKQIVGVPNMDGFVKNPDILSFYIASKIPVSESTRQELLEIDGISYRLRREIELLKSIDIIQCKNCKTVIAKRSDMLVMSTEGPLSAYVNPHGYVHEIMTLYRANGLALRGRAETEYSWFPGYEIDLTSLFEPASISSHLNLYGRRKNVVSRYAWTISICATCETQLGWLFTATNRNLKPRSFWGIRSSQLADATR 574
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24978607 24985607 + ClCG08G012110.2 Cla08g01207 278862

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01207 574 Gene3D Peptide methionine sulfoxide reductase. 432 507 - -
Cla08g01207 574 Gene3D Peptide methionine sulfoxide reductase. 522 574 - -
Cla08g01207 574 ProSiteProfiles Lon N-terminal domain profile. 91 435 IPR003111 -
Cla08g01207 574 PANTHER CEREBLON 527 570 - -
Cla08g01207 574 Gene3D - 367 431 - -
Cla08g01207 574 SUPERFAMILY PUA domain-like 90 434 IPR015947 -
Cla08g01207 574 Gene3D - 71 199 IPR046336 -
Cla08g01207 574 ProSiteProfiles CULT domain profile. 436 573 IPR034750 -
Cla08g01207 574 Pfam ATP-dependent protease La (LON) substrate-binding domain 90 434 IPR003111 -
Cla08g01207 574 CDD CRBN_C_like 439 569 IPR034750 -
Cla08g01207 574 SMART lon_5 90 435 IPR003111 -
Cla08g01207 574 PANTHER CEREBLON 1 503 - -
Cla08g01207 574 PANTHER BNAA09G40760D PROTEIN 1 503 - -
Cla08g01207 574 PANTHER BNAA09G40760D PROTEIN 527 570 - -
Cla08g01207 574 MobiDBLite consensus disorder prediction 272 337 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01207 K11793 CRBN; cereblon - csv:101218954 975.311
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g8 . . . . . . . . . . . . . Car12g00223 Sed01g1255 Cpe07g00203 . Bhi04g00871 Tan02g2544 Cmetu03g1530 . . . Lcy13g1434 . . . . . . . . . . . . . . . . Blo18g00311 Bda01g00940 . . . . . . . . . Cma12g00240 . . . . . . . . . . . Cla08g01207 Cam08g1669 Cec08g1247 Cco08g1364 Clacu08g1366 . Cre08g1151 . Csa02g02252 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009150 1 2 1 0 1 1 2 1 1 0 1 1 2 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla08g01207 Cla_Chr08 FPKM 29.256546 32.325378 35.127701 35.348064 57.000381 55.68026 58.992085 62.95216 57.940178 59.743061