Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01208 ATGGAGAGTTCAATGAAGAAGACAATGAGCAATGGTAGTGTTCATATGGAGATGGAAGAAATAGACAATAAGTTTGAAGAAGCTTATGGAGAACATAATGCCACTGAAGATCAGCTTATTACTCCCTGGACTGTCTCTGTTGCTAGTGGTTATTCCTTATTGCGTGATCCGATCTACAACAAAGGCCTTGCCTTTAGTGAAAAAGAAAGAGATGCTCATTACTTGCGTGGCTTATTGCCACCAGCACTTCTTGATCAAGAGCTTCAGGAAAGGAGGATGATGCATAATCTTCGGAACTATGAAGTTCCATTACACAGATATATTGCTATGATGGATCTTCAGAGAAATTTGGGTTGTAGAGGAAGGGGATTTGAGCTTGAAGTTTTGGGATTAATGGAGAGTTCAATGAAGAAGACAATGAGCAATGGTAGTGTTCATATGGAGATGGAAGAAATAGACAATAAGTTTGAAGAAGCTTATGGAGAACATAATGCCACTGAAGATCAGCTTATTACTCCCTGGACTGTCTCTGTTGCTAGTGGTTATTCCTTATTGCGTGATCCGATCTACAACAAAGGCCTTGCCTTTAGTGAAAAAGAAAGAGATGCTCATTACTTGCGTGGCTTATTGCCACCAGCACTTCTTGATCAAGAGCTTCAGGAAAGGAGGATGATGCATAATCTTCGGAACTATGAAGTTCCATTACACAGATATATTGCTATGATGGATCTTCAGGAGAGAAATGAAAGGCTGTTCTACAAGCTTCTCATCGATAACGTTGAAGAACTGCTTCCAGTTGTGTACACGCCAACCGTAGGTGAAGCTTGCCAGAAGTATGGAAGCATTTACAGGCGACCTCAGGGCCTTTTCATCAGTTTGAAAGAGAAGGGCAAGATTCTTGAAGTTTTGAAGAACTGGCCAGAAAGGAACATTCAAGTTATTGTTGTTACCGATGGTGAGCGGATTCTAGGCCTTGGGGATCTCGGATGCCAGTGCTTGCCAATCACCATTGACGTCGGTACGAACAACGAGCAGCTTCTTAACGATGAGTTTTACATTGGACTTCGACATAAACGGGCCAGAGGACAGGAATACATGGAACTTTTAGATGAGTTCATGTATGCAGTAAAGAAGAACTATGGAGAGAAAGTCCTTATACAGTTTGAAGACTTCGCAAACCACAATGCATTTGAGTTGCTTTCGAGATATAGCTCGTCACACCTTGTGTTTAACGACGACATTCAAGCTGGAACTGGTATAGCTGAGCTTATTGCTTTGGAGATTTCAAAACAGACTGGAGCTCCAACTGAAGAGACTCGCAAGAAGATTTGGCTTGTGGACTCAAAGGGGCTGATCGTTCGATCCCGCTTTGAATCCCTTCAACATTTCAAGAAGCCTTGGGCTCATGACCATGAATCTATCAAGGATCTTTACGGTGCCGTCCAGGCAATCAAGCCAACAGTGTTGATAGGAACATCTGGTGTTGGGAAGACATTTACAAAGGAAGTTGTGGAGGCCATGGCATCCTTCAATGAGAAACCACTTATCCTTGCTCTCTCGAACCCTACGTCGCAATCGGAGTGTACAGCTGAAGAAGCTTATACATGGAGCCAGGGCCGAGCGATCTTTGCTAGCGGAAGTCCATTTGACCCTGTTGAATATGATGGGAAAGTTTTTGTGCCTGGCCAGGCAAACAATGCTTACATATTCCCTGGATTTGGCTTGGGTCTGATCATGTCGGGAACGATTCGTGTGCACGATGACATGCTCTTAGCAGCCTCGGAGGCTTTGGCTGCCCAAGTGAGTCAGGAAAACTATGACAAGGGATTGATTTACCCTCCTTTTACCAACATCAGAAAGATATCTGCTAACATTGCTGCTGAAGTTGCTGCTAAGGCTTATGAACTTGGTCTGGCTTCTCGTCTTCCTCGACCGAAGGATCTCGTAAAATTTGCCGAGAGCTGCATGTACAGCCCCCGCTACCGTAGCTACCTTTAA 1998 43.94 MESSMKKTMSNGSVHMEMEEIDNKFEEAYGEHNATEDQLITPWTVSVASGYSLLRDPIYNKGLAFSEKERDAHYLRGLLPPALLDQELQERRMMHNLRNYEVPLHRYIAMMDLQRNLGCRGRGFELEVLGLMESSMKKTMSNGSVHMEMEEIDNKFEEAYGEHNATEDQLITPWTVSVASGYSLLRDPIYNKGLAFSEKERDAHYLRGLLPPALLDQELQERRMMHNLRNYEVPLHRYIAMMDLQERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIYRRPQGLFISLKEKGKILEVLKNWPERNIQVIVVTDGERILGLGDLGCQCLPITIDVGTNNEQLLNDEFYIGLRHKRARGQEYMELLDEFMYAVKKNYGEKVLIQFEDFANHNAFELLSRYSSSHLVFNDDIQAGTGIAELIALEISKQTGAPTEETRKKIWLVDSKGLIVRSRFESLQHFKKPWAHDHESIKDLYGAVQAIKPTVLIGTSGVGKTFTKEVVEAMASFNEKPLILALSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPVEYDGKVFVPGQANNAYIFPGFGLGLIMSGTIRVHDDMLLAASEALAAQVSQENYDKGLIYPPFTNIRKISANIAAEVAAKAYELGLASRLPRPKDLVKFAESCMYSPRYRSYL 665
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24987320 24993573 - ClCG08G012120.1 Cla08g01208 278863

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01208 665 PANTHER MALIC ENZYME 134 415 - -
Cla08g01208 665 Gene3D - 395 665 - -
Cla08g01208 665 Gene3D - 48 155 - -
Cla08g01208 665 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 158 413 IPR046346 -
Cla08g01208 665 CDD NAD_bind_1_malic_enz 416 659 - -
Cla08g01208 665 PANTHER MALIC ENZYME-RELATED 134 415 - -
Cla08g01208 665 PIRSF ME 330 416 IPR001891 GO:0004470|GO:0004471
Cla08g01208 665 PIRSF ME 139 332 IPR001891 GO:0004470|GO:0004471
Cla08g01208 665 PIRSF ME 415 665 IPR001891 GO:0004470|GO:0004471
Cla08g01208 665 PIRSF ME 14 155 IPR001891 GO:0004470|GO:0004471
Cla08g01208 665 PANTHER MALIC ENZYME-RELATED 416 664 - -
Cla08g01208 665 PRINTS Malic enzyme signature 311 340 IPR001891 GO:0004470|GO:0004471
Cla08g01208 665 PRINTS Malic enzyme signature 251 275 IPR001891 GO:0004470|GO:0004471
Cla08g01208 665 PANTHER MALIC ENZYME 416 664 - -
Cla08g01208 665 Pfam Malic enzyme, NAD binding domain 415 633 IPR012302 GO:0051287
Cla08g01208 665 PANTHER MALIC ENZYME-RELATED 5 115 - -
Cla08g01208 665 PANTHER MALIC ENZYME 5 115 - -
Cla08g01208 665 SMART Malic_M_2 399 634 IPR012302 GO:0051287
Cla08g01208 665 SMART malic_2 245 404 IPR012301 GO:0004471
Cla08g01208 665 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 27 116 IPR046346 -
Cla08g01208 665 Coils Coil 18 38 - -
Cla08g01208 665 Coils Coil 149 169 - -
Cla08g01208 665 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 415 664 IPR036291 -
Cla08g01208 665 Pfam Malic enzyme, N-terminal domain 245 331 IPR012301 GO:0004471
Cla08g01208 665 Gene3D - 179 332 IPR037062 GO:0004471
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01208 K00029 E1.1.1.40, maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40] - csv:101218724 1053.12
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g01264 Cla-Chr7:29741547 Cla08g01208 Cla-Chr8:24987320 2.03E-31 dispersed
Cla08g01208 Cla-Chr8:24987320 Cla09g00014 Cla-Chr9:169221 1.68E-33 dispersed
Cla08g01208 Cla-Chr8:24987320 Cla03g01555 Cla-Chr3:31203593 5.59E-40 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g7 . . . . . . . . . . . . . Car12g00224 . Cpe07g00204 . Bhi04g00869 Tan06g0248 . . Hepe10g0379 . Lcy13g1433 . . . . . . . . . . . . . . . Blo17g00302 . . Bda13g01324 . . . Bma02g00080 . . . . Cma12g00241 . . . . . . . . . . . Cla08g01208 Cam08g1670 Cec08g1248 Cco08g1365 Clacu08g1367 . Cre08g1152 . Csa02g02253 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000336 4 5 1 2 4 4 7 4 4 4 4 4 7 4 3 7 4 5 8 4 4 4 4 4 2 4 4 7 9 4 135
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla08g01208 Cla_Chr08 FPKM 3.550162 3.862758 5.842559 5.623636 0.0 0.0 0.0 0.0 0.0 0.0