Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01209 ATGGAAGCTCCTGAATATTTCCAGATCAATGGCTACTGTTCTCAATTCGCCACCCACTCCTCCTCCGACAACGACTCCGCCACCGCCACCGCCACAGCCACTGCCGCCGGACCGGAGCATTTCATCGTGGAGGAGCTTCTCGATTTCTCCAACGATGACGACGCCGTTATTGGTGACGGTGGAGGATTGTTTTACAATAATAATAACAATGGGAATAATAATTCAACGGAATGTTCCGCCGTTACGGTGATTGAGAGTTGCAATTCGTCGTCGTTTTTGGAAGATATTAGTGGCTCTAATTTAACCGACGCCCATTTCTCCAGCGAACTCTGCGTTCCGTACGACGATTTAGCTGAGTTGGAATGGCTTTCACATTTCGTAGAGGAATCATTTTCCAGCGAGGACATGCAAAAGTTGGAATTAATCTCCGGAGTCAAAGTCAAAGAACCCGCCCAATCCCCACAACCCACCGTCTCTCACGGCCGAAAAGCCGCCGCAATTTTCAAACCGGACATCGTTTCCGTTCCGGCCAAAGCCCGTAGCAAACGCTCACGCGCCGTCCCATCCAATTGGAACAACTCCCGCCTCCTTCCTCTTTCTCCCACCACCGAACCCGAAATTACCACCACCGCGGGACCACCGCACCCCATCAAAAAACCCCCTCCCAAGGCGGCGACAGCCAAGAAGAAGGACAGCCCGGAGGTCGGAGTGTCCTCCGGCGAGGGGCGAAAGTGCATGCACTGCGCCACCGACAAGACGCCGCAGTGGCGGACCGGCCCAATGGGCCCGAAAACGCTGTGTAATGCTTGCGGCGTTCGGTACAAATCCGGCCGCCTGGTGCCGGAGTACCGCCCCGCCGCTAGCCCCACCTTCGTTTTAACCAAACACTCCAATTCTCACCGGAAAGTTTTGGAGCTCCGGCGGCAGAAAGAGCTTCTTAGAGCCCAACAACAGCAACAACAACATTTGCTTTTGGATCATCATCAGGATATGATCTTTGATGCATCCAACGGTGATGATTATCTCATTCATCAACATGTGGGCCCCGATTTCCGGCAGCTGATCTGA 1068 53.56 MEAPEYFQINGYCSQFATHSSSDNDSATATATATAAGPEHFIVEELLDFSNDDDAVIGDGGGLFYNNNNNGNNNSTECSAVTVIESCNSSSFLEDISGSNLTDAHFSSELCVPYDDLAELEWLSHFVEESFSSEDMQKLELISGVKVKEPAQSPQPTVSHGRKAAAIFKPDIVSVPAKARSKRSRAVPSNWNNSRLLPLSPTTEPEITTTAGPPHPIKKPPPKAATAKKKDSPEVGVSSGEGRKCMHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKELLRAQQQQQQHLLLDHHQDMIFDASNGDDYLIHQHVGPDFRQLI 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25013061 25014877 - ClCG08G012130.1 Cla08g01209 278864

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01209 355 MobiDBLite consensus disorder prediction 178 243 - -
Cla08g01209 355 CDD ZnF_GATA 244 291 IPR000679 GO:0006355|GO:0043565
Cla08g01209 355 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 241 303 - -
Cla08g01209 355 Pfam GATA zinc finger 245 278 IPR000679 GO:0006355|GO:0043565
Cla08g01209 355 ProSiteProfiles GATA-type zinc finger domain profile. 239 275 IPR000679 GO:0006355|GO:0043565
Cla08g01209 355 PANTHER GATA TRANSCRIPTION FACTOR 1 355 - -
Cla08g01209 355 SMART GATA_3 239 289 IPR000679 GO:0006355|GO:0043565
Cla08g01209 355 MobiDBLite consensus disorder prediction 185 209 - -
Cla08g01209 355 ProSitePatterns GATA-type zinc finger domain. 245 270 IPR000679 GO:0006355|GO:0043565
Cla08g01209 355 PIRSF Txn_fac_GATA_plant 22 334 IPR016679 GO:0003677|GO:0005634|GO:0045893
Cla08g01209 355 Gene3D - 238 289 IPR013088 GO:0006355|GO:0008270
Cla08g01209 355 PANTHER GATA TRANSCRIPTION FACTOR 1 355 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01209 - - - csv:101205219 478.404
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g01209 Cla-Chr8:25013061 Cla09g00007 Cla-Chr9:110787 2.10E-87 dispersed
Cla10g01271 Cla-Chr10:27544838 Cla08g01209 Cla-Chr8:25013061 1.44E-35 transposed
Cla11g01481 Cla-Chr11:28444181 Cla08g01209 Cla-Chr8:25013061 2.72E-112 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla08g01209 . 89 355 C2C2-Gata Transcription Factor Family AT5G25830 55.7 8.9e-69 257.7
Cla11g01481 . 40 350 C2C2-Gata Transcription Factor Family AT5G25830 50.2 8.3e-67 251.1
Cla01g01957 . 107 283 C2C2-Gata Transcription Factor Family AT4G36240 50.3 8.7e-42 167.5
Cla09g01216 . 291 807 C2C2-Gata Transcription Factor Family AT4G17570 51.7 1.1e-134 477.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002406 3 2 1 1 0 1 2 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 2 2 2 4 2 1 60
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61580 PF00320 GATA 1.80E-15 CL0167 Cla TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla08g01209 Cla_Chr08 FPKM 0.0 0.271071 1.575132 1.323015 0.0 0.0 0.0 0.325145 0.273274 0.412679