Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01209 ATGGAAGCTCCTGAATATTTCCAGATCAATGGCTACTGTTCTCAATTCGCCACCCACTCCTCCTCCGACAACGACTCCGCCACCGCCACCGCCACAGCCACTGCCGCCGGACCGGAGCATTTCATCGTGGAGGAGCTTCTCGATTTCTCCAACGATGACGACGCCGTTATTGGTGACGGTGGAGGATTGTTTTACAATAATAATAACAATGGGAATAATAATTCAACGGAATGTTCCGCCGTTACGGTGATTGAGAGTTGCAATTCGTCGTCGTTTTTGGAAGATATTAGTGGCTCTAATTTAACCGACGCCCATTTCTCCAGCGAACTCTGCGTTCCGTACGACGATTTAGCTGAGTTGGAATGGCTTTCACATTTCGTAGAGGAATCATTTTCCAGCGAGGACATGCAAAAGTTGGAATTAATCTCCGGAGTCAAAGTCAAAGAACCCGCCCAATCCCCACAACCCACCGTCTCTCACGGCCGAAAAGCCGCCGCAATTTTCAAACCGGACATCGTTTCCGTTCCGGCCAAAGCCCGTAGCAAACGCTCACGCGCCGTCCCATCCAATTGGAACAACTCCCGCCTCCTTCCTCTTTCTCCCACCACCGAACCCGAAATTACCACCACCGCGGGACCACCGCACCCCATCAAAAAACCCCCTCCCAAGGCGGCGACAGCCAAGAAGAAGGACAGCCCGGAGGTCGGAGTGTCCTCCGGCGAGGGGCGAAAGTGCATGCACTGCGCCACCGACAAGACGCCGCAGTGGCGGACCGGCCCAATGGGCCCGAAAACGCTGTGTAATGCTTGCGGCGTTCGGTACAAATCCGGCCGCCTGGTGCCGGAGTACCGCCCCGCCGCTAGCCCCACCTTCGTTTTAACCAAACACTCCAATTCTCACCGGAAAGTTTTGGAGCTCCGGCGGCAGAAAGAGCTTCTTAGAGCCCAACAACAGCAACAACAACATTTGCTTTTGGATCATCATCAGGATATGATCTTTGATGCATCCAACGGTGATGATTATCTCATTCATCAACATGTGGGCCCCGATTTCCGGCAGCTGATCTGA 1068 53.56 MEAPEYFQINGYCSQFATHSSSDNDSATATATATAAGPEHFIVEELLDFSNDDDAVIGDGGGLFYNNNNNGNNNSTECSAVTVIESCNSSSFLEDISGSNLTDAHFSSELCVPYDDLAELEWLSHFVEESFSSEDMQKLELISGVKVKEPAQSPQPTVSHGRKAAAIFKPDIVSVPAKARSKRSRAVPSNWNNSRLLPLSPTTEPEITTTAGPPHPIKKPPPKAATAKKKDSPEVGVSSGEGRKCMHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKELLRAQQQQQQHLLLDHHQDMIFDASNGDDYLIHQHVGPDFRQLI 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25013061 25014877 - ClCG08G012130.1 Cla08g01209 278864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01209 355 MobiDBLite consensus disorder prediction 178 243 - -
Cla08g01209 355 CDD ZnF_GATA 244 291 IPR000679 GO:0006355|GO:0043565
Cla08g01209 355 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 241 303 - -
Cla08g01209 355 Pfam GATA zinc finger 245 278 IPR000679 GO:0006355|GO:0043565
Cla08g01209 355 ProSiteProfiles GATA-type zinc finger domain profile. 239 275 IPR000679 GO:0006355|GO:0043565
Cla08g01209 355 PANTHER GATA TRANSCRIPTION FACTOR 1 355 - -
Cla08g01209 355 SMART GATA_3 239 289 IPR000679 GO:0006355|GO:0043565
Cla08g01209 355 MobiDBLite consensus disorder prediction 185 209 - -
Cla08g01209 355 ProSitePatterns GATA-type zinc finger domain. 245 270 IPR000679 GO:0006355|GO:0043565
Cla08g01209 355 PIRSF Txn_fac_GATA_plant 22 334 IPR016679 GO:0003677|GO:0005634|GO:0045893
Cla08g01209 355 Gene3D - 238 289 IPR013088 GO:0006355|GO:0008270
Cla08g01209 355 PANTHER GATA TRANSCRIPTION FACTOR 1 355 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g01209 Cla-Chr8:25013061 Cla09g00007 Cla-Chr9:110787 2.10E-87 dispersed
Cla10g01271 Cla-Chr10:27544838 Cla08g01209 Cla-Chr8:25013061 1.44E-35 transposed
Cla11g01481 Cla-Chr11:28444181 Cla08g01209 Cla-Chr8:25013061 2.72E-112 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61580 PF00320 GATA 1.80E-15 CL0167 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01209 - - csv:101205219 478.404