Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01215 ATGCCTGAGCTCCGTCGCAAACCACGCAGGAGCCGGGTATCCGAAGACCCAGAACCGATTGCGCACCAAACACCCGTTAAGTTAACTGTAACAACACGCCACCGAGGGCAACCTGCTAAACGCAGTGTTGGGAAGAGTATTAAGGAGGGGAAACACGCGATCGATGCCGATGGCGACAGGGATGTTGTGAACCCTGGAATCGGTCTTGAAACGAGGCTACTGCGTGAGAACAAAGACGAAGTAGTTGGGAAGGATAAAGACCTACTGCAGCTTGGTGTTAGAGCTATGGATGAGTTCGATAGCGGTGGACGGAACGGCGATAAGGGTCCTGTAGCCGAAGATGAAGGCACGACTACTCCTCTTCCGGAGAAGGTCCAGGTTGGTGGTTCTCCATTATATAAAGTTGAAAAAAAACTGGGTAAAGGAGGTTTTGGTCAGGTGTATGTGGGTCGACGAGTGGGTCCCACAAGTTTGAATGAAAGATCTGGCCCTGGAGCTGTGGAGGTAGCCTTGAAATTTGAGCATAGAAGTAGTAAAGGGTGCAACTATGGACCTCCTTACGAGTGGCAGGTTTACAATGCACTAGGTGGCAGCCATGGTGTGCCACGAGTTCATTACAAGGGTCGGCAAGGTGACTATTATGTCATGGTTATGGACATGCTTGGACCTAGTCTCTGGGATGTCTGGAATAACAATGCTCACACGATGTCAATTGAAATGGTAGCATGTATCGCCATTGAGGCCATCTCCATATTAGAGAAGATGCATTCTAGAGGGGCTCCCTTGTGTGATATGGAGGGACAGTATGTGCATGGTGATGTGAAGCCTGAAAATTTTCTGCTTGGTCCTCCAGGAACCCCAGAAGAGAAAAAGTTGTTTCTTGTAGATCTTGGTTTAGCAACCAAGTGGCGAGATAGTTCGACTGGTCAACATGTTGAGTATGATCAACGACCAGACGTTTTCCGGGGAACAGTTCGGTATGCTAGTGTGCATGCACATCTTGGCAGAACTGCTAGTCGGAGAGATGACTTAGAATCACTCGCTTACACGCTTGTTTTTCTTCTTCGTGGTCGGCTGCCTTGGCAAGGATATCAGGGAGAAAATAAAGGATTCCTTGTGTCCAAGAAGAAGATGGCTACTTCCTCTGAAACGCTGTGCTGTTTTTGCCCTCAGCCTTTTAGACAGTTTGTTGAGTATGTTGTAAATTTGAAATTTGATGAAGAGCCAAACTATGCAAGATATATCTCCCTCTTTGATGGGATTGTCGGTCCAAATCCAGATATCCGTCCAATAAACACAGATGGTGCACAAAAAGTTGGGCATAAGAGAGGAAGGCTATCCATGGAGGATGAAGATGATGAACAACCAAAGAAGAAAGTTCGAATGGGGATGCCTGCAACTCAATGGATTAGTGTTTATAATGCCCGTAGACCAATGAAACAAAGATACCACTATAATGTTGCTGATATGAGGCTCTCTCAGCATATTGAGAAGGGGAATGAAGATGGTTTATTTATTAGTTGTGTTGCTTCATGTTCAAACCTTTGGGCCCTTATTATGGATGCTGGAACTGGATTTACTGCTCAAGTTTATGAACTCTCACCATTCTTTCTTCACAAGGAATGGATCATGGAACAGTGGGAGAAAAACTATTACATCAGTGCAATAGCAGGAGCTAATAACGGGAGCTCATTGGTAGTAATGTCCAAAGGGACTCAGTACCTCCAGCAATCCTATAAAGTCAGCGATTCATTTCCCTTCAAGTGGATAAATAAGAAATGGAGGGAGGGATTTTATGTTACTGCCATGGCCACTGCCGGCAGTAGATGGGCAATTGTCATGTCACGTGGTGCAGGATTTTCTGACCAGGTTGTGGAACTGGATTTCCTGTATCCCAGTGAAGGCATTCATCGCAGGTGGGATGGTGGTTACCGCATCACATCAACTGCAGCAACTTTGGACCAGGCTGCTTTTGTTCTGAGTGTGCCAAGGAGAAAGCCTGCTGATGAAACTCAAGAAACACTCCGAACATCTGCCTTTCCTAGTACACATGTCAAGGAGAAATGGGCAAAGAATCTTTATATTGCATCTATTTGCTACGGCCGAACTGTTTCATGA 2118 45.94 MPELRRKPRRSRVSEDPEPIAHQTPVKLTVTTRHRGQPAKRSVGKSIKEGKHAIDADGDRDVVNPGIGLETRLLRENKDEVVGKDKDLLQLGVRAMDEFDSGGRNGDKGPVAEDEGTTTPLPEKVQVGGSPLYKVEKKLGKGGFGQVYVGRRVGPTSLNERSGPGAVEVALKFEHRSSKGCNYGPPYEWQVYNALGGSHGVPRVHYKGRQGDYYVMVMDMLGPSLWDVWNNNAHTMSIEMVACIAIEAISILEKMHSRGAPLCDMEGQYVHGDVKPENFLLGPPGTPEEKKLFLVDLGLATKWRDSSTGQHVEYDQRPDVFRGTVRYASVHAHLGRTASRRDDLESLAYTLVFLLRGRLPWQGYQGENKGFLVSKKKMATSSETLCCFCPQPFRQFVEYVVNLKFDEEPNYARYISLFDGIVGPNPDIRPINTDGAQKVGHKRGRLSMEDEDDEQPKKKVRMGMPATQWISVYNARRPMKQRYHYNVADMRLSQHIEKGNEDGLFISCVASCSNLWALIMDAGTGFTAQVYELSPFFLHKEWIMEQWEKNYYISAIAGANNGSSLVVMSKGTQYLQQSYKVSDSFPFKWINKKWREGFYVTAMATAGSRWAIVMSRGAGFSDQVVELDFLYPSEGIHRRWDGGYRITSTAATLDQAAFVLSVPRRKPADETQETLRTSAFPSTHVKEKWAKNLYIASICYGRTVS 705
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25050707 25055748 + ClCG08G012185.1 Cla08g01215 278870

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01215 705 ProSitePatterns Protein kinases ATP-binding region signature. 139 172 IPR017441 GO:0005524
Cla08g01215 705 CDD STKc_CK1 133 418 - -
Cla08g01215 705 MobiDBLite consensus disorder prediction 42 59 - -
Cla08g01215 705 SMART serkin_6 133 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla08g01215 705 MobiDBLite consensus disorder prediction 429 460 - -
Cla08g01215 705 Pfam Protein kinase domain 133 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla08g01215 705 ProSiteProfiles Protein kinase domain profile. 133 428 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla08g01215 705 SUPERFAMILY Protein kinase-like (PK-like) 133 424 IPR011009 -
Cla08g01215 705 ProSitePatterns Serine/Threonine protein kinases active-site signature. 269 281 IPR008271 GO:0004672|GO:0006468
Cla08g01215 705 MobiDBLite consensus disorder prediction 98 126 - -
Cla08g01215 705 PANTHER CASEIN KINASE-RELATED 101 679 - -
Cla08g01215 705 Gene3D Transferase(Phosphotransferase) domain 1 112 468 - -
Cla08g01215 705 MobiDBLite consensus disorder prediction 436 460 - -
Cla08g01215 705 MobiDBLite consensus disorder prediction 1 59 - -
Cla08g01215 705 MobiDBLite consensus disorder prediction 1 17 - -
Cla08g01215 705 PANTHER CASEIN KINASE 1-LIKE PROTEIN HD16 101 679 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01215 - - - csv:101218249 1328.92
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g02307 Cla-Chr2:38193482 Cla08g01215 Cla-Chr8:25050707 0 dispersed
Cla04g00540 Cla-Chr4:18952815 Cla08g01215 Cla-Chr8:25050707 0 dispersed
Cla08g01215 Cla-Chr8:25050707 Cla09g00012 Cla-Chr9:161281 0 dispersed
Cla08g01215 Cla-Chr8:25050707 Cla05g00439 Cla-Chr5:3922505 3.75E-56 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g5 . Blo12g01057 . Bda03g00159 . . . . Cmo05g00120 . . . . Car12g00229 Sed09g1609 Cpe07g00209 . Bhi04g00862 Tan02g2553 Cmetu03g1333 . Hepe10g0373 . Lcy13g1421 . . . . . . . . Cone7ag1308 . . . . . . . . . . . Bpe04g00141 . . . . . . Cma12g00246 . . . . Bhi09g02568 . . . Hepe01g2213 Mch11g0761 . Cla08g01215 Cam08g1676 Cec08g1254 Cco08g1373 Clacu08g1374 . Cre08g1159 . Csa02g02262 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000235 6 9 5 7 6 4 9 4 4 5 4 4 8 4 4 7 4 6 8 4 4 4 4 4 4 4 4 11 5 5 161
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80753 PF00069 Pkinase 1.60E-12 CL0016 Cla PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla08g01215 Cla_Chr08 FPKM 5.219618 4.747297 8.210758 8.501944 9.245929 9.279938 10.14978 8.696101 10.148383 12.145299