Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01218 ATGATAAATTGTAGAAGTGAATTTGTGGTATACCAATCAACCGCTCCGATCTTCGTTTCCTTCTCGAGCTTAGCTTTTGATAGCAGCAAAGACGCCGCACCTCTGTGTTTTCCTTTGATCCGTCTCGCATTCCAAACTCTGATTTCTCACTGTTACGCTGCTTTCATTGCCAAGTTTTCTGAAAGGCGATGGAGGACTCCGGGACTCGACCTTCTGCCGGTAAATCGACTGGTAATGTCGTCGCTATTGCTGCCGGTGAAGCTCACACTCTCCTTCTCACAGTTAACCAGGAACGAAGCCGAGCTGGTGACGGAGTTTTGTGGAGATGGCAGGATGTATTCATGGGGAAGAGGAATGTTTGGGCGGCTTGGGACGGGGGCGGAAGCAGACGAGCTTTTCCCTGTTCGAGTTAAGCTTGGTTCGGAGGAAGAGAATCTCAAAGTTGTGGCAATTGCTGCTGGTTCTTATCATAGCCTCGCTCTTGCTGTGTGCTTGTATGTCTTTTTGGTTATCAAATATCGCATTCGGTCTTCAGATAGATCTTTCTTTGAATTAACACACCAGCGGGTTCGTGCTCTTGCAATATCTGATGACAAGTTTGATGCACATATTCATTTTAGTGGCTTAGAGATATTTGTTTCAAATGGGAGAGGAAAAACTCTCACTCATAAAGCTGTAAGAAGTAAGAACGTTCTCCAACTGGTTGAGATAATGAGCAATATCTTTTATGAATTGACTGCTTTATCATATAACATAATCTACCAATGTCTTCGTCGGGCCTATCTCATGTCATCTCATGAGAAACGGTGGTTAAATTTTTTTATATGTATATATACCATACAAGAAACTAATGGCATAAACCAGAATGCACCTTACAAGTTTGACCAAAGTATGATTTTAACTAAAATTAAAATATTTATGGCCATGAAGAGAAGACAGGAGGACACTGAAAATATGATACTCACCCAAGATTTATTTGCAGATGATGGTTCAGTTTGGTGCTGGGGTTACAATATCTGTATCCTTTCAAATGCCTTCACACGGATGCATTCATTTTTCCTCTTAGTGTTATGTCCTCTTTTCATCCTTGACTATCATAAAGATGGCCAACTTGGATTTGATGGAGGGAATTCCGCCACCCCTTGCTTGCTGAAACAGTTCCTTGAGTTGGAATCTCCAGAATCTTTGACAGAAGAGTCAGGCTCAAAGAGTAAGGGGTCACTAAAGGTCTGTCGGGATTCTCTCCTGATTTGTGACATCAAAGCCGGGGGGTTGATTTCTTTTGCAATTGACGATCTTGGAGCCCTATGGATGTGGGGTAATTGTCCAAAACCAAATGGTGAGAATGAAGTTGGCTTATCTTATGTTAGCAGCTTCACACCCTCTCCAGTGTGGGATTTCCATGGCCATACTGTAGTTAAGGTTGCTTGTGGAAATGAGCATATTGTGGCGCTGGTTACTGTTGGGGAAACCTACAATAATGGTGAAGACTTAGTTTGCTACTCCTGGGGCGATAATTCTCATGGTCAATTAGGCTTGGGAGATAGAGATGGCAGACCACACCCCCAAATTATCGAGACATTTAATGAGGCATCTCCTTGGGCAGTGTACGAAGTAGCATGCGGGGCATTCCATACTGCTTTACTTAGCCGCAGAAAGAGACCATGTGACGGCTTAGAAAGTGTGTGTTGGACATTTGGTCTCGGGGAAAATGGACAGCTTGGGCATGGAACCACCCAAAATGAATTGCTTCCTAAGCCTGTAAAAGAGTTGCCACAATCTGTATCTCTGATCTCAGTTGATTGTGGCCTATTTCATACGAGTGTTGTTTCATCAGGTGGAGATCTGTGGTCTTGGGGAATGGAAAGGGGACTTGGCCTTTGTCCAGATGCTAGTTTCACTGGAACTGACACCGGCGATGCTATATCTCCCCTATCCTTCTTCTGCAATGGGTCTGAATCACCAAAATTTTTGGATCCCGTTCAAGTTGCTTGTGGGGCTGCTCATACTGTTATAGTTGCACATAATGGATATAAATTGTGGTCATGGGGACGAGGAAGAAGCGGAGTTCTTGGAAATGGTAAGACAGTCGATTGTTTTACTCCCACGATCGTCTTATGGCCTCCACTTGACGAGGATTTCAATCAAGAGGGAACCGAAACCAAAAGCGAGGAAGATAAAGTTGAACAAAATAAACCCGAGGAAGTAACCGAAGAAAACAAAAAGCTGTTAATAGCTATGGAGGAAATAAAACTTCTTCAAGAGAAATTATCTATCATGGAACGGTATGCAAGCTTTCTTCATGGCTCAATATTTGGAAAACCTTTCCAAGAGGGAGATATCCCACTCTCATTGGGAAATTCTGGTACTCTCGACATTGCTAAGGAATGGGAAAGCATGTTAGAGTCCACAGATCGCTCAAATCTTTTAAGGTTGGAGGTGGTCTATCAAAACATGCTGGCAAGTATTAAAGACAAGATAATGAAGAAAAGGGTCCAGGAGCTTGTGAAGGAGTTTCTTCAATCATCAATGTCTCCAAATTAG 2544 43.0 MINCRSEFVVYQSTAPIFVSFSSLAFDSSKDAAPLCFPLIRLAFQTLISHCYAAFIAKFSERRWRTPGLDLLPVNRLVMSSLLLPVKLTLSFSQLTRNEAELVTEFCGDGRMYSWGRGMFGRLGTGAEADELFPVRVKLGSEEENLKVVAIAAGSYHSLALAVCLYVFLVIKYRIRSSDRSFFELTHQRVRALAISDDKFDAHIHFSGLEIFVSNGRGKTLTHKAVRSKNVLQLVEIMSNIFYELTALSYNIIYQCLRRAYLMSSHEKRWLNFFICIYTIQETNGINQNAPYKFDQSMILTKIKIFMAMKRRQEDTENMILTQDLFADDGSVWCWGYNICILSNAFTRMHSFFLLVLCPLFILDYHKDGQLGFDGGNSATPCLLKQFLELESPESLTEESGSKSKGSLKVCRDSLLICDIKAGGLISFAIDDLGALWMWGNCPKPNGENEVGLSYVSSFTPSPVWDFHGHTVVKVACGNEHIVALVTVGETYNNGEDLVCYSWGDNSHGQLGLGDRDGRPHPQIIETFNEASPWAVYEVACGAFHTALLSRRKRPCDGLESVCWTFGLGENGQLGHGTTQNELLPKPVKELPQSVSLISVDCGLFHTSVVSSGGDLWSWGMERGLGLCPDASFTGTDTGDAISPLSFFCNGSESPKFLDPVQVACGAAHTVIVAHNGYKLWSWGRGRSGVLGNGKTVDCFTPTIVLWPPLDEDFNQEGTETKSEEDKVEQNKPEEVTEENKKLLIAMEEIKLLQEKLSIMERYASFLHGSIFGKPFQEGDIPLSLGNSGTLDIAKEWESMLESTDRSNLLRLEVVYQNMLASIKDKIMKKRVQELVKEFLQSSMSPN 847
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25060127 25064423 + ClCG08G012200.2 Cla08g01218 278873

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01218 847 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 475 485 IPR000408 -
Cla08g01218 847 SUPERFAMILY RCC1/BLIP-II 109 161 IPR009091 -
Cla08g01218 847 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 110 164 IPR000408 -
Cla08g01218 847 MobiDBLite consensus disorder prediction 715 735 - -
Cla08g01218 847 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 561 613 IPR000408 -
Cla08g01218 847 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 434 488 IPR000408 -
Cla08g01218 847 Coils Coil 736 756 - -
Cla08g01218 847 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 498 552 IPR000408 -
Cla08g01218 847 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 326 843 - -
Cla08g01218 847 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HERC2-LIKE PROTEIN 106 164 - -
Cla08g01218 847 Gene3D - 496 752 IPR009091 -
Cla08g01218 847 Gene3D - 315 495 IPR009091 -
Cla08g01218 847 Pfam Regulator of chromosome condensation (RCC1) repeat 109 161 IPR000408 -
Cla08g01218 847 Pfam Regulator of chromosome condensation (RCC1) repeat 564 609 IPR000408 -
Cla08g01218 847 Pfam Regulator of chromosome condensation (RCC1) repeat 501 549 IPR000408 -
Cla08g01218 847 Pfam Regulator of chromosome condensation (RCC1) repeat 680 708 IPR000408 -
Cla08g01218 847 PRINTS Chromosome condensation regulator RCC1 signature 148 161 IPR000408 -
Cla08g01218 847 PRINTS Chromosome condensation regulator RCC1 signature 111 127 IPR000408 -
Cla08g01218 847 PRINTS Chromosome condensation regulator RCC1 signature 493 514 IPR000408 -
Cla08g01218 847 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 539 549 IPR000408 -
Cla08g01218 847 SUPERFAMILY RCC1/BLIP-II 327 712 IPR009091 -
Cla08g01218 847 MobiDBLite consensus disorder prediction 711 735 - -
Cla08g01218 847 Gene3D - 91 169 IPR009091 -
Cla08g01218 847 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HERC2-LIKE PROTEIN 326 843 - -
Cla08g01218 847 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 106 164 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01218 - - - csv:101217770 872.463
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g01218 Cla-Chr8:25060127 Cla04g00201 Cla-Chr4:6478855 2.62E-06 dispersed
Cla08g01218 Cla-Chr8:25060127 Cla03g01218 Cla-Chr3:25969879 6.22E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g285 . . . . . . . . . Cmo12g00200 . . . Car12g00233 . Cpe07g00211 . . . . . . . . . . . . . . . . . . . . . . Cme03g01749 Blo17g00065 . . Bda13g01328 . . . . . . . . Cma12g00248 . . . . . . . . . . . Cla08g01218 Cam08g1677 Cec08g1255 Cco08g1375 Clacu08g1375 . Cre08g1160 Lsi08g01081 . Chy03g01253 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009895 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 3 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla08g01218 Cla_Chr08 FPKM 23.902039 27.391266 26.199287 26.562778 17.792969 20.022907 18.471813 35.479977 32.444981 35.186653