Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01223 ATGAGCACTAAACAAATGAGTCCTTCAGAAACAGAGTCCTCTACTACTTCTTCATCTTCTTCCTCAGATTCAAACAAAAAACCCAAACGAATCAACAACAATTCCAATTCAAAACACCCAGTTTACAGAGGCGTTCGAATGAGAAATTGGGGAAAATGGGTATCTGAAATTCGAGAGCCAAGGAAGAAATCTCGCATTTGGTTAGGAACTTTCCCCAGCCCTGAAATGGCTGCTCGAGCTCATGATGTTGCTGCTCTAAGCATTAAAGGAAATTCTGCTATCCTTAACTTTCCCGAACTTGTTCATCTTCTTCCTCGCCCTGTTTCTCTTGCTCCTCGTGATGTTCAAGCCGCCGCTGCTAAAGCCGCTCATATGCATAACCTTTCTTCCAATACTAATCTTAATAATATTAATACTAATTCTTCCTCTGCTTTTTCCGATGAACTTACTGAGATCGTCGAGTTACCCAGCCTTGGAACGAGTTATGACGGCGGCGGTGGTGAGTTTGTGTTTGTTGACTCGGAATTGGAATCGGCTGCGTGGCTTTACGCGCCGCCGTGGCTGCAGAGCTTGGAGGAGGAGTATGATGATGACAATGGGGACTGTGGTACGTTGGGAATGGGATTTCTTTCTAATGGGTTCAAAGGGTTTTTGTGGGATTATTGA 666 44.29 MSTKQMSPSETESSTTSSSSSSDSNKKPKRINNNSNSKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPSPEMAARAHDVAALSIKGNSAILNFPELVHLLPRPVSLAPRDVQAAAAKAAHMHNLSSNTNLNNINTNSSSAFSDELTEIVELPSLGTSYDGGGGEFVFVDSELESAAWLYAPPWLQSLEEEYDDDNGDCGTLGMGFLSNGFKGFLWDY 221
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25148826 25149491 - ClCG08G012250.1 Cla08g01223 278878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01223 221 MobiDBLite consensus disorder prediction 1 40 - -
Cla08g01223 221 Gene3D AP2/ERF domain 41 100 IPR036955 GO:0003700|GO:0006355
Cla08g01223 221 PRINTS Ethylene responsive element binding protein signature 42 53 IPR001471 GO:0003700|GO:0006355
Cla08g01223 221 PRINTS Ethylene responsive element binding protein signature 64 80 IPR001471 GO:0003700|GO:0006355
Cla08g01223 221 Pfam AP2 domain 40 90 IPR001471 GO:0003700|GO:0006355
Cla08g01223 221 CDD AP2 42 100 IPR001471 GO:0003700|GO:0006355
Cla08g01223 221 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 5 195 - -
Cla08g01223 221 SMART rav1_2 41 104 IPR001471 GO:0003700|GO:0006355
Cla08g01223 221 SUPERFAMILY DNA-binding domain 41 99 IPR016177 GO:0003677
Cla08g01223 221 MobiDBLite consensus disorder prediction 1 43 - -
Cla08g01223 221 ProSiteProfiles AP2/ERF domain profile. 41 98 IPR001471 GO:0003700|GO:0006355
Cla08g01223 221 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 5 195 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00038 Cla-Chr5:503229 Cla08g01223 Cla-Chr8:25148826 3.48E-41 dispersed
Cla08g01223 Cla-Chr8:25148826 Cla11g00204 Cla-Chr11:2372697 6.29E-54 dispersed
Cla11g01484 Cla-Chr11:28476465 Cla08g01223 Cla-Chr8:25148826 4.06E-69 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61582 PF00847 AP2 5.30E-14 CL0081 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01223 K09286 - csv:101206242 340.117