Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla08g01223 | ATGAGCACTAAACAAATGAGTCCTTCAGAAACAGAGTCCTCTACTACTTCTTCATCTTCTTCCTCAGATTCAAACAAAAAACCCAAACGAATCAACAACAATTCCAATTCAAAACACCCAGTTTACAGAGGCGTTCGAATGAGAAATTGGGGAAAATGGGTATCTGAAATTCGAGAGCCAAGGAAGAAATCTCGCATTTGGTTAGGAACTTTCCCCAGCCCTGAAATGGCTGCTCGAGCTCATGATGTTGCTGCTCTAAGCATTAAAGGAAATTCTGCTATCCTTAACTTTCCCGAACTTGTTCATCTTCTTCCTCGCCCTGTTTCTCTTGCTCCTCGTGATGTTCAAGCCGCCGCTGCTAAAGCCGCTCATATGCATAACCTTTCTTCCAATACTAATCTTAATAATATTAATACTAATTCTTCCTCTGCTTTTTCCGATGAACTTACTGAGATCGTCGAGTTACCCAGCCTTGGAACGAGTTATGACGGCGGCGGTGGTGAGTTTGTGTTTGTTGACTCGGAATTGGAATCGGCTGCGTGGCTTTACGCGCCGCCGTGGCTGCAGAGCTTGGAGGAGGAGTATGATGATGACAATGGGGACTGTGGTACGTTGGGAATGGGATTTCTTTCTAATGGGTTCAAAGGGTTTTTGTGGGATTATTGA | 666 | 44.29 | MSTKQMSPSETESSTTSSSSSSDSNKKPKRINNNSNSKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPSPEMAARAHDVAALSIKGNSAILNFPELVHLLPRPVSLAPRDVQAAAAKAAHMHNLSSNTNLNNINTNSSSAFSDELTEIVELPSLGTSYDGGGGEFVFVDSELESAAWLYAPPWLQSLEEEYDDDNGDCGTLGMGFLSNGFKGFLWDY | 221 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 25148826 | 25149491 | - | ClCG08G012250.1 | Cla08g01223 | 278878 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla08g01223 | 221 | MobiDBLite | consensus disorder prediction | 1 | 40 | - | - | |
Cla08g01223 | 221 | Gene3D | AP2/ERF domain | 41 | 100 | IPR036955 | GO:0003700|GO:0006355 | |
Cla08g01223 | 221 | PRINTS | Ethylene responsive element binding protein signature | 42 | 53 | IPR001471 | GO:0003700|GO:0006355 | |
Cla08g01223 | 221 | PRINTS | Ethylene responsive element binding protein signature | 64 | 80 | IPR001471 | GO:0003700|GO:0006355 | |
Cla08g01223 | 221 | Pfam | AP2 domain | 40 | 90 | IPR001471 | GO:0003700|GO:0006355 | |
Cla08g01223 | 221 | CDD | AP2 | 42 | 100 | IPR001471 | GO:0003700|GO:0006355 | |
Cla08g01223 | 221 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE | 5 | 195 | - | - | |
Cla08g01223 | 221 | SMART | rav1_2 | 41 | 104 | IPR001471 | GO:0003700|GO:0006355 | |
Cla08g01223 | 221 | SUPERFAMILY | DNA-binding domain | 41 | 99 | IPR016177 | GO:0003677 | |
Cla08g01223 | 221 | MobiDBLite | consensus disorder prediction | 1 | 43 | - | - | |
Cla08g01223 | 221 | ProSiteProfiles | AP2/ERF domain profile. | 41 | 98 | IPR001471 | GO:0003700|GO:0006355 | |
Cla08g01223 | 221 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 5 | 195 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla05g00038 | Cla-Chr5:503229 | Cla08g01223 | Cla-Chr8:25148826 | 3.48E-41 | dispersed | |
Cla08g01223 | Cla-Chr8:25148826 | Cla11g00204 | Cla-Chr11:2372697 | 6.29E-54 | dispersed | |
Cla11g01484 | Cla-Chr11:28476465 | Cla08g01223 | Cla-Chr8:25148826 | 4.06E-69 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
61582 | PF00847 | AP2 | 5.30E-14 | CL0081 | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla08g01223 | K09286 | - | csv:101206242 | 340.117 |