Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01225 ATGGAGATAGACAGAGATGATGGTCGCACCCCTAACCAGTTGAGACCACTTGCTTGTTCTTGCAACGTTCTTAATCGTGCTCATGGCTCCGCCAGTTGGTCGCAAGGCGATACGAAGGTTCTTGCTGCAGTTTATGGACCTAAAGCGGGAACGAAGAAGAATGAAAATCCTGAGAAGGCTTCAATTGAGGTTATATGGAAACCCAAGACAGGGCAGATTGGAAAACTGGAAAGGGAGTGTGAGATGATATTAAAGCGGACGTTGCAGAGTATTTGCATATTAAATGCTAATCCCAATACCACCACATCTATTATTGTTCAGGTTATTCATGATGATGGAGCTCTTCTTCCTTGTGCTATTAATGCATCATGTGCTGCCCTTGTAGATGCTGGAATTCCTTTAAAGCATCTTGCTGTTGCGATTTCCTGTTGTTTGTCTGAGAGTGGATATGTTATTTTGGATCCAACCAAGCTAGAGGAGCAGAACATGAAGGCATTTGTACATTTGGTCTTCCCAAACTCATCTGTCTCAGTAGTTCCTGAAAGATCTACACACGTTGAAGGTGAACCACTGGAGCATGGAATAATAACATCTGTAACTCAGGGTGCAATGTCAGTGGATGATTATATTCTCTGCCTGGAACGGGGGCGTGCTGCTACTGCAAAAATGTCTGCTTTTTTGAGGGGAAGCTTGCAGCCCCAACTCCCAACGGATTCCTCAAAAGCTGGCTGA 732 44.54 MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILNANPNTTTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQNMKAFVHLVFPNSSVSVVPERSTHVEGEPLEHGIITSVTQGAMSVDDYILCLERGRAATAKMSAFLRGSLQPQLPTDSSKAG 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25163948 25167252 + ClCG08G012270.1 Cla08g01225 278880

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01225 243 Pfam 3' exoribonuclease family, domain 1 13 133 IPR001247 -
Cla08g01225 243 SUPERFAMILY Ribosomal protein S5 domain 2-like 11 132 IPR020568 -
Cla08g01225 243 Gene3D - 1 241 IPR027408 -
Cla08g01225 243 CDD RNase_PH_RRP46 14 228 - -
Cla08g01225 243 PANTHER EXOSOME COMPLEX COMPONENT RRP46 1 233 - -
Cla08g01225 243 SUPERFAMILY Ribonuclease PH domain 2-like 133 232 IPR036345 -
Cla08g01225 243 PANTHER EXOSOME COMPLEX COMPONENT 1 233 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01225 K12590 RRP46, EXOSC5; exosome complex component RRP46 - csv:101205616 449.899
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g02071 Cla-Chr2:35791549 Cla08g01225 Cla-Chr8:25163948 9.88E-17 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g295 . . . . Bpe02g01180 . . . . Cmo12g00208 . . . Car12g00239 Sed12g1115 Cpe07g00218 . Bhi04g00842 Tan02g2563 Cmetu04g1511 . Hepe10g0359 . . . . . . . . . . . Cone17ag1121 . . . . Cme03g01739 . . Bda01g00935 . . . . . . . . . Cma12g00255 . . . . . . . . . . . Cla08g01225 Cam08g1684 Cec08g1263 Cco08g1383 Clacu08g1382 . Cre08g1167 Lsi08g01088 . Chy03g01246 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012378 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 0 1 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla08g01225 Cla_Chr08 FPKM 59.455933 52.541309 71.281158 69.127388 82.989563 76.133217 68.186287 124.246986 135.465744 129.623978