Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01226 ATGGATTCCGTCCTTGAACTAGCCGAAATATCAATGGCCAGAATTGCAATGGGAAGCATCGGCGAGGCCTCCCAGCCCGACTGCATCCGAGCCCTCATTGTCGAGTTCATTGTCACTTTCCTCTTCGTCTTCGCTGGCGTCGGATCAGCCATGGCTGCCAATGCGTTATTGGCAAACACACTAGTGGGTTTATTTGCCGTTGCCGTCGCACATGCGCTTGTAGTGGCTGTGATGATTTCCACAGGTCATATTTCCGGTGGCCACCTCAACCCCGCCGTCACTCTTGGTCTCCTTTTGGGTGGCCACATCACAGTTGTTCGATCCGCTCTATATTGGATCGTTCAGTTACTAGCAGCTTCAGCTGCTAGCTTTTTGTTAACGTACCTCACCGGAGGCTTGGTGAGTCTATATTCTTTCCTTCATCTCAGTACAAATCCATTTTCAAGATCTCATCTTCCATTCAACTATATAAAAGCAACTATTTATATTCATCGCCACAATCCAACTAGCAGTTTTTCACTGATATATGAAAAAGAAATCCTCGAATTTACATTAGTGCTATTAGAGAACATGTCATGGCGAACTCACAGAATAACTTATCCAACTATTGTCACTCCAATTCATACATTAGCAAGCGGAGTTGGTTATATTCAGGGAGTGATATGGGAGATTATTCTAACCTTTTCCTTGCTATTCACTGTGTATGGAACAATTGTTGACCCAAAAAAGGGGGCTCTTGATGGGCTGGGTCCATTGCTGACTGGGTTTGTGGTGGGAGCCAACATCTTGGCTGGTGGGGCTTTTTCAGGAGCTTCAATGAACCCAGCAAGATCATTTGGGCCAGCTTTGGTGGCTGGAGACTGGACTGACCATTGGGTTTACTGGGTTGGGCCTCTTATTGGTGGTGGGCTTGCTGGATTCATCTATGAAAATTTTCTCATTCAAAGATCTCATGTGCCTCTACCTAGGGAGGAAGATGGCTATTAG 987 46.0 MDSVLELAEISMARIAMGSIGEASQPDCIRALIVEFIVTFLFVFAGVGSAMAANALLANTLVGLFAVAVAHALVVAVMISTGHISGGHLNPAVTLGLLLGGHITVVRSALYWIVQLLAASAASFLLTYLTGGLVSLYSFLHLSTNPFSRSHLPFNYIKATIYIHRHNPTSSFSLIYEKEILEFTLVLLENMSWRTHRITYPTIVTPIHTLASGVGYIQGVIWEIILTFSLLFTVYGTIVDPKKGALDGLGPLLTGFVVGANILAGGAFSGASMNPARSFGPALVAGDWTDHWVYWVGPLIGGGLAGFIYENFLIQRSHVPLPREEDGY 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25167953 25169515 - ClCG08G012280.2 Cla08g01226 278881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01226 328 PANTHER AQUAPORIN-8 13 134 IPR034294 -
Cla08g01226 328 ProSitePatterns MIP family signature. 88 96 IPR022357 -
Cla08g01226 328 Gene3D Glycerol uptake facilitator protein. 13 323 IPR023271 -
Cla08g01226 328 PANTHER AQUAPORIN TIP4-1 13 134 - -
Cla08g01226 328 PRINTS Major intrinsic protein family signature 107 126 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla08g01226 328 PRINTS Major intrinsic protein family signature 292 312 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla08g01226 328 PRINTS Major intrinsic protein family signature 30 49 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla08g01226 328 PRINTS Major intrinsic protein family signature 255 277 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla08g01226 328 PRINTS Major intrinsic protein family signature 70 94 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla08g01226 328 PANTHER AQUAPORIN TIP4-1 203 326 - -
Cla08g01226 328 Pfam Major intrinsic protein 23 309 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla08g01226 328 PANTHER AQUAPORIN-8 203 326 IPR034294 -
Cla08g01226 328 SUPERFAMILY Aquaporin-like 25 322 IPR023271 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g00933 Cla-Chr4:24297743 Cla08g01226 Cla-Chr8:25167953 1.32E-19 dispersed
Cla08g01226 Cla-Chr8:25167953 Cla09g00167 Cla-Chr9:1719283 2.17E-26 dispersed
Cla08g01226 Cla-Chr8:25167953 Cla10g01892 Cla-Chr10:34818950 3.40E-24 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01226 K09873 - thj:104803763 289.271