Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01235 ATGGCGAGAACTATGGAAAGTGATCCTCCGCTTTGTACTCCTTTAGATGTGCCTGGTGACAGTGGTCAGAATATTCGAGCCTTGCATAGCCGAAGGACAACTGGGCCTACTAGACGTTCCACCAAAGGCCAATGGACAGCTGAAGAGGATGAAATCTTGCGGAAGGCAGTCCAACGTTTCAAAGGCAAAAACTGGAAGAAAATAGCACTTGGAGCACTTCTCTTACTTCTTTATCATTTGCACATTGTGGGTCTCGGTATAGTTATCGACCTGTTAAGATCCTTCAGCGAAGTTTCAGTGTACCTAATTGATATGAATAGAGATCTGCTGTGGAAAACCTGCTCGAGTGCTCCGGAATGCTTCAAGGATCGAACTGACGTGCAATGTCTACATAGGTGGCAGAAGGTTTTGAATCCAGAACTTGTCAAAGGTCCATGGTCTAAAGAGGAAGATGAAATAATTGTTGAATTGGTGGAAAAGTATGGACCTAAGAAGTGGTCCACCATAGCACAGCACTTGCCTGGACGCATTGGTAAGCAATGTAGAGAAAGGTGGCACAATCATTTAAATCCAGCCATTAACAAGGAGGCGTGGACACAAGAAGAAGAGTTGGCACTTATTCGTGCTCATCAAATATATGGAAATAGATGGGCAGAGCTAACGAAGTTTTTGCCTGGCAGATTCTTCATGTTCATTGATGTAATGACTTGCTTTAGTACATTATCCTTTACAGAACTTCATTATTCTGTATTTATCTTCAGCTCTGCTAAGATACCCATGAGAGTGATGACAGACAATGCTATAAAGAACCACTGGAATAGTTCTGTGAAAAAGAAATTGGATTCTTACTTGGCATCCGGTTTACTCGAACAGTATCAACCCCTGCATCATGCAGTGCAATCAAGCGTACCCATGCTTTCATCCTCAAGGGTGCAAAGCAGTATAGATGATAGCAGTCTCAGGGGGGCAGAAACAGAGGACATATCTGAAGTCAGTCAAACTTCAGCTATTGGTGCTTACTCCAATACGATTCCACGCACAAAAGAGGAATGCCAATTGGCTGAAGATGCTTTCTTAAAAGAGGAACAAGGCTCAACACCACATTGTTCGGAGCAATATCATGCTTCTTTGGATGACATCACTTTTTCGATTCCTGAAATGCTCAGTGAATTGGGTTGCTATGTGAAACAACCCCCTAACCAAAATTTCTCACAGGATTGCGGAACTTCATCAACTGGAGATAACCAATATAATTTGTACGAGTTACCAAATATTTCTTCATTGGAATTAGGTCAGGAGTTGTCACACTTTCAAGCAAATGGATCTCAGGAAGTAGAAAATGCTCCACATCAAACTTCTGCAGGATTGAGTGCATCTACTGTCAAAAATATGGCTAGGGCTTCAGATAAACCTGAACATATGCTGATATCAGATTATGAATGTTGCAGGGTCCTTTTTTCAGATGCAATAATCAATGAATCTTTTCCTTCTGAAAATACAACGGATGCCCCAGACATGGTTGAACTGAATGGATATGCACACCCTTTGCACCGTCAATCAACGAGCATTGAAATGCCAGAAAGTAATAGAAACTTATCATTGCAATCGTATCATCATCCGGGATCTGATGTTCTTGATAACTCATGTTCTCAACGTTATTTAGCTCCTCTCTTGGTTTCTGCTAATGATGATACTTATGTATATACAAGTGAAACCAGTCATTTATTCGAAACTCTCGAACAAGAGCTTGTAGCTAATGGACAGGATGGCTTTATCTATACCAATGAATCTGCCGACTCTTCTCCCAAGGATGATTTCAAGAACGCAGAACTCCAAAAGCAGCAGGGTTCAAAGGATCCATCAAAGCTGGTTCCTGTAAATACTTTTTGTTCAGAACCTAAAACTGCAGAGAGTTTGCCTTCATCTAGTGGAAGAGAGAAAACACATCCAGATCAACCGGACCTTGGTGGAGCTCTTTGTTACGAGCCTCCTCGTTTTCCAAGCTTGGATGTTCCATTCCTTAGCTGTGATCTTGCACCAGCCGCCAGTGATATGCAGCAAGAATATAGTCCGCTCGGTATCCGTCAACTTATGATGTCTTCTATGAACTGTCTTACTCCATTTAGGCTATGGAATTCACCTACCCGTGATGAAAGTCCCGATGCTGTGCTGAAAAGTGCTGCTAAAACTTTCACTAATACTCCATCAATCTTGAAGAAACGCCATAGAGAATTCTTATCTCCTGTATCAGATAAACGATGTGACAAAAAGCAAGAGATTGATGTTGGCATTAGTAGAACATCATCTCATACTAATCCATCGCACCAGACAATCAATTCTAGAAGCTCTGAAGATAAGGAAAATATCTGTCCTACAGAAGAAGTGAGACTAGATAAGCAAAGTGATCGTCGTAACATTTTGCATAGCAAATACCCAGAGAGAACTTCAGATACCTGCTTGCAAGAACTGGATAATGCCGCGATAACCGAGCGTGTTGATTCTATTGGCCAAACAGTCCTTGTTGAATGTGACACGAACGACTCGCTCTTGTATTCCATACCGGACGATCATTGTGCACTTGCAAACTGTTCTGTTGCCATTGGAACAGGCCATGGAACTCGTCCTCCAACGGCTACGTGCTTAAACTCGGAGTCCACAACGGCACCTGCTGAGGTTACAGGTGATAATGCCTCAAAGGAGTCCTCCATTGAAACCATAACCATATTCGGTGGAACTCCATTCAAGAGAAGCATCGAATCTCCTTCAGCTTGGAAGTCCCCTTGGTTCATCAACTCTTTTCTATTTGGTCCAAGAATGGATGCTGATGAAGTTGGATTCTTTATGAGCCCAGGGGATAGGAGCTACGATGCAATTGGGTTGATGAAAGAGGTAGGCGAGCACACTGCGGCTGCGTGTGCGAATGCTCAGGAGGTTCTGGGAAATGAAACGCCACAATCCTTATTAAAAGGAAGGCGTGGGAAATATGAGAATCAGAACAAGGGGAAGAATCATTTAACCAACTCCCTACAAGGAGTCCGTTCTACTTTGGCTCCGGATATTTTGACAGAACGGCGGACTCTAGACTTCAGCGAATGTGGGACACCTGGCAAAGGAACTGAGAACGGAAAATCCTCTACAAGGAGCTTCTCGAGCCCCTCTTCGTACTTATTGAAGGGCTGCAGGTAG 3186 43.03 MARTMESDPPLCTPLDVPGDSGQNIRALHSRRTTGPTRRSTKGQWTAEEDEILRKAVQRFKGKNWKKIALGALLLLLYHLHIVGLGIVIDLLRSFSEVSVYLIDMNRDLLWKTCSSAPECFKDRTDVQCLHRWQKVLNPELVKGPWSKEEDEIIVELVEKYGPKKWSTIAQHLPGRIGKQCRERWHNHLNPAINKEAWTQEEELALIRAHQIYGNRWAELTKFLPGRFFMFIDVMTCFSTLSFTELHYSVFIFSSAKIPMRVMTDNAIKNHWNSSVKKKLDSYLASGLLEQYQPLHHAVQSSVPMLSSSRVQSSIDDSSLRGAETEDISEVSQTSAIGAYSNTIPRTKEECQLAEDAFLKEEQGSTPHCSEQYHASLDDITFSIPEMLSELGCYVKQPPNQNFSQDCGTSSTGDNQYNLYELPNISSLELGQELSHFQANGSQEVENAPHQTSAGLSASTVKNMARASDKPEHMLISDYECCRVLFSDAIINESFPSENTTDAPDMVELNGYAHPLHRQSTSIEMPESNRNLSLQSYHHPGSDVLDNSCSQRYLAPLLVSANDDTYVYTSETSHLFETLEQELVANGQDGFIYTNESADSSPKDDFKNAELQKQQGSKDPSKLVPVNTFCSEPKTAESLPSSSGREKTHPDQPDLGGALCYEPPRFPSLDVPFLSCDLAPAASDMQQEYSPLGIRQLMMSSMNCLTPFRLWNSPTRDESPDAVLKSAAKTFTNTPSILKKRHREFLSPVSDKRCDKKQEIDVGISRTSSHTNPSHQTINSRSSEDKENICPTEEVRLDKQSDRRNILHSKYPERTSDTCLQELDNAAITERVDSIGQTVLVECDTNDSLLYSIPDDHCALANCSVAIGTGHGTRPPTATCLNSESTTAPAEVTGDNASKESSIETITIFGGTPFKRSIESPSAWKSPWFINSFLFGPRMDADEVGFFMSPGDRSYDAIGLMKEVGEHTAAACANAQEVLGNETPQSLLKGRRGKYENQNKGKNHLTNSLQGVRSTLAPDILTERRTLDFSECGTPGKGTENGKSSTRSFSSPSSYLLKGCR 1061
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25250955 25259561 - ClCG08G012370.2 Cla08g01235 278890

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01235 1061 ProSiteProfiles Myb-like domain profile. 138 189 IPR001005 -
Cla08g01235 1061 PANTHER TRANSCRIPTION REPRESSOR MYB5 9 69 - -
Cla08g01235 1061 CDD SANT 197 227 IPR001005 -
Cla08g01235 1061 PANTHER TRANSCRIPTION REPRESSOR MYB5 119 227 - -
Cla08g01235 1061 MobiDBLite consensus disorder prediction 1027 1061 - -
Cla08g01235 1061 SMART sant 142 191 IPR001005 -
Cla08g01235 1061 SMART sant 194 278 IPR001005 -
Cla08g01235 1061 SMART sant 41 139 IPR001005 -
Cla08g01235 1061 MobiDBLite consensus disorder prediction 593 656 - -
Cla08g01235 1061 PANTHER MYB PROTEIN-RELATED 119 227 - -
Cla08g01235 1061 CDD SANT 45 137 IPR001005 -
Cla08g01235 1061 SUPERFAMILY Homeodomain-like 38 69 IPR009057 -
Cla08g01235 1061 PANTHER MYB PROTEIN-RELATED 9 69 - -
Cla08g01235 1061 PANTHER MYB PROTEIN-RELATED 264 795 - -
Cla08g01235 1061 SUPERFAMILY Homeodomain-like 140 228 IPR009057 -
Cla08g01235 1061 MobiDBLite consensus disorder prediction 765 779 - -
Cla08g01235 1061 ProSiteProfiles Myb-like domain profile. 37 137 IPR001005 -
Cla08g01235 1061 MobiDBLite consensus disorder prediction 1037 1055 - -
Cla08g01235 1061 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 37 69 IPR017930 -
Cla08g01235 1061 MobiDBLite consensus disorder prediction 1 45 - -
Cla08g01235 1061 MobiDBLite consensus disorder prediction 765 788 - -
Cla08g01235 1061 CDD SANT 145 189 IPR001005 -
Cla08g01235 1061 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 138 193 IPR017930 -
Cla08g01235 1061 MobiDBLite consensus disorder prediction 631 646 - -
Cla08g01235 1061 PANTHER TRANSCRIPTION REPRESSOR MYB5 778 1060 - -
Cla08g01235 1061 PANTHER TRANSCRIPTION REPRESSOR MYB5 264 795 - -
Cla08g01235 1061 Pfam Myb-like DNA-binding domain 143 189 IPR001005 -
Cla08g01235 1061 Pfam Myb-like DNA-binding domain 42 69 IPR001005 -
Cla08g01235 1061 Pfam Myb-like DNA-binding domain 195 227 IPR001005 -
Cla08g01235 1061 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 194 227 IPR017930 -
Cla08g01235 1061 ProSiteProfiles Myb-like domain profile. 190 227 IPR001005 -
Cla08g01235 1061 PANTHER MYB PROTEIN-RELATED 778 1060 - -
Cla08g01235 1061 Gene3D - 143 194 - -
Cla08g01235 1061 Gene3D - 196 294 - -
Cla08g01235 1061 Gene3D - 35 142 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01235 - - K09420 csv:101206476 1618.21
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g01235 Cla-Chr8:25250955 Cla11g01376 Cla-Chr11:27287051 0 dispersed
Cla08g01235 Cla-Chr8:25250955 Cla06g01665 Cla-Chr6:30238153 1.07E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g326 . . . . Bpe02g01194 . . Bma01g02549 Cmo05g00628 Cmo12g00216 Cma01g01601 Cma05g00602 Car09g00486 Car12g00247 . Cpe07g00226 Cpe06g00421 Bhi04g00827 . . . . . . . . . . . . . . . Cone17ag1113 . Lsi04g02229 Csa03g04440 . Cme03g01729 . . Bda01g00948 . . . . . . Cmo01g01648 Cmo09g00544 Cma09g00554 Cma12g00263 Car01g01221 Car05g00545 Cpe11g00526 . Bhi09g02425 . . . . Mch11g0660 . Cla08g01235 Cam08g1692 . Cco08g1392 . . . Lsi08g01097 . Chy03g01233 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001481 1 6 0 1 2 1 4 1 1 2 2 2 4 2 2 4 1 2 4 2 2 2 2 2 2 2 2 6 2 3 69
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61583 PF00249 Myb_DNA-binding 1.30E-18 CL0123 Cla TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla08g01235 Cla_Chr08 FPKM 0.0 0.0 0.942538 0.956167 0.897953 1.007113 0.331259 1.20882 0.882698 1.212755