Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01236 ATGGATGTTTGTTCCAAGGTCACTCGACAATGCGGCACTACCTGTTTCCAATCGTGGCCGTTTCAACGGCACGTTGGTTGTTATGCCAACGTGGGCCGGATCGTGGGGAATAAACCGAACCCGCAAGAAAACTCAGTACTCGAAATCGAAACCCTACTCTCTGCTTCTTCTTCTTCTTCTTCTTTTTTTTCCCGCCCGCGTTTTTTCTCCGTCTCAAACTTTCTTCCAATCATGGAGAATTCTGTTCTTGACCAAGAAATGGCCAAGAAAGTGCTTCGTCAGGTCGAGTTCTATTTCAGTGACAGTAATCTTCCTAGAGATTGTTTTCTTAGGAAAAATATTAGCGAAAGCCCTGATGGAAGTATCCTTCACCTTCTGATCATACGTTATTTCGTTGATCTTAACTGTGCAATTACAGTGGTCGATTTGTCTTTAATCTGTTCGTTTTCTCGGATGAGAGGCCATCTTGAATTGAAACACGAGATGAAAGATGAGATTCCAGAAGATACTATGAAGGCCGTCGCTGAAACTCTAAGAAGCTCTTCAACTCTTAAAGTTTCTGAAGATGGTAAGAGGGTTGGTAGAGCTACTGAACTCCCAAAGCCTGAGGAGTTAATAGAACAATTGGATGTTAGAACCGTAGCTGCATCACCCTTTGAATATGATGTCAAGCTTGAAGATGTAGAAGCTTTCTTTGATCGAGTTGCAAAGGTCAGTAGTGTGAGGCTTCCCCGTAATGTTGCAGATAAACGGGTATTCTGTGGAACTGCCTTGGTAGAATTTTCTACTGAGGAAGATGCATTAAAAGTTTTGAAGGAAAGCTTGGTTTATGCTGGTGCCAAGTTAGAATTGAAACCAAAGAGGGATTTTGATGAGGAGAGAGCAAAAGAGACAGAGAAGTTTGAAAGTTCACGCTCAACCTCAGGTGCAAACCGCAATAATAATAATTCCCCAGAATCAAGCTACCCTAAAGGCTTAATTGTCGCCTTTACATTGAAAAGCATGTCTTCTGAAAGTTCTGCTGAGGAAAATGGATCTAATGGTGTAGCCGCTGATAAGACTGAATGCAAAACAGATGAAGGATTAGATTCCTCAAAGAATGACTCTGAGAAAACTGAGCAAATAGAAGCAAATATGAGTAAAGATGAAGAAATTAAGGAAAGTGCTGATGATAAGAATGGAGAGGCTGAACAGAAAAATGATTCCGTTAATGAAGAGAGTCCTGAAGTGGAAGAACAATCTATGGACGATCCCAATGATGAACATGAAGAGGCTGAAGAAAAGCTCACAGCTGTTAAATCCAAGAACAATATGAATGTGGTTTCGCGCGAGGATTTGAAGGCTGTTTTTCAGAAGTTTGGAAGTGTCAAGATTGGAGACGAGTCCGGCTATATCAGGTTTGAGGAGCCTGAAGCTGCCCAGAAAGCCCGTGCCACTGCACTACTAGCTGAGCAAGGAGGACTGGCCGTGAAGAATTTTATTGCCACTTTAGAACCAGTGTCAGGTGAGGCTGAGAAGGCGTATTGGAGTCTACTTCGCAGCAACCAAGAGAAGCATCATCGCGACTTTAAAGGAAACCGTGGAAGGGGTGGTAAATTCAATCGAGGTGGAAAGCATGGTCGGTCAAGGGGGAACGACAATCATCGAGGTCGCCCGAACAAAGCTCAAAAGGTTGAAAAGCTTGGTTCTTTATGGCCGGCTCTGCTACAATTTTGCTGCAAGTCAGATTTTGGAGGGGGAAGCGCTTCGCATCTGGATCTACTGATACTCATCAGCCTCATGTTTAGTTTAGTTTGA 1797 43.18 MDVCSKVTRQCGTTCFQSWPFQRHVGCYANVGRIVGNKPNPQENSVLEIETLLSASSSSSSFFSRPRFFSVSNFLPIMENSVLDQEMAKKVLRQVEFYFSDSNLPRDCFLRKNISESPDGSILHLLIIRYFVDLNCAITVVDLSLICSFSRMRGHLELKHEMKDEIPEDTMKAVAETLRSSSTLKVSEDGKRVGRATELPKPEELIEQLDVRTVAASPFEYDVKLEDVEAFFDRVAKVSSVRLPRNVADKRVFCGTALVEFSTEEDALKVLKESLVYAGAKLELKPKRDFDEERAKETEKFESSRSTSGANRNNNNSPESSYPKGLIVAFTLKSMSSESSAEENGSNGVAADKTECKTDEGLDSSKNDSEKTEQIEANMSKDEEIKESADDKNGEAEQKNDSVNEESPEVEEQSMDDPNDEHEEAEEKLTAVKSKNNMNVVSREDLKAVFQKFGSVKIGDESGYIRFEEPEAAQKARATALLAEQGGLAVKNFIATLEPVSGEAEKAYWSLLRSNQEKHHRDFKGNRGRGGKFNRGGKHGRSRGNDNHRGRPNKAQKVEKLGSLWPALLQFCCKSDFGGGSASHLDLLILISLMFSLV 598
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25261615 25267926 - ClCG08G012380.2 Cla08g01236 278891

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01236 598 SMART rrm1_1 213 285 IPR000504 GO:0003723
Cla08g01236 598 MobiDBLite consensus disorder prediction 304 322 - -
Cla08g01236 598 MobiDBLite consensus disorder prediction 337 426 - -
Cla08g01236 598 PANTHER LUPUS LA PROTEIN-RELATED 79 352 IPR045180 -
Cla08g01236 598 PANTHER LUPUS LA PROTEIN-RELATED 373 559 IPR045180 -
Cla08g01236 598 MobiDBLite consensus disorder prediction 290 323 - -
Cla08g01236 598 CDD LA_like_plant 88 195 - -
Cla08g01236 598 Pfam La domain 91 179 IPR006630 -
Cla08g01236 598 SMART la 85 196 IPR006630 -
Cla08g01236 598 ProSiteProfiles xRRM domain profile. 425 546 IPR014886 GO:0003723
Cla08g01236 598 MobiDBLite consensus disorder prediction 407 423 - -
Cla08g01236 598 SUPERFAMILY Winged helix DNA-binding domain 81 202 IPR036390 -
Cla08g01236 598 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 212 297 IPR000504 GO:0003723
Cla08g01236 598 MobiDBLite consensus disorder prediction 519 555 - -
Cla08g01236 598 Gene3D - 79 200 IPR036388 -
Cla08g01236 598 MobiDBLite consensus disorder prediction 353 406 - -
Cla08g01236 598 PANTHER BNAANNG34180D PROTEIN 79 352 - -
Cla08g01236 598 PANTHER BNAANNG34180D PROTEIN 373 559 - -
Cla08g01236 598 Coils Coil 386 413 - -
Cla08g01236 598 Gene3D - 414 527 IPR012677 -
Cla08g01236 598 Gene3D - 206 302 IPR012677 -
Cla08g01236 598 ProSiteProfiles La-type HTH domain profile. 81 203 IPR006630 -
Cla08g01236 598 CDD RRM1_La 213 285 - -
Cla08g01236 598 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 220 272 IPR000504 GO:0003723
Cla08g01236 598 SUPERFAMILY RNA-binding domain, RBD 212 478 IPR035979 GO:0003676
Cla08g01236 598 MobiDBLite consensus disorder prediction 539 555 - -
Cla08g01236 598 CDD RRM2_La_like 441 498 - -
Cla08g01236 598 Pfam RNA binding motif 440 525 IPR014886 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01236 K11090 LA, SSB; lupus La protein - csv:101204162 729.939
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g01236 Cla-Chr8:25261615 Cla09g01411 Cla-Chr9:26315957 3.22E-09 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g328 . . . . . . . . Cmo05g00630 Cmo12g00218 . Cma05g00604 . Car12g00248 Sed01g1286 Cpe07g00227 . Bhi04g00824 Tan02g2579 Cmetu03g0669 . Hepe10g0345 . Lcy13g1390 . . . . . . . . . . . . . . Cme03g01728 . . . Bda13g01316 Bpe14g00532 . . Bma02g00072 . . . . Cma12g00264 . Car05g00546 Cpe11g00527 . . . . . . . . Cla08g01236 Cam08g1693 Cec08g1272 Cco08g1393 Clacu08g1390 . Cre08g1175 Lsi08g01099 . Chy03g01232 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009894 1 1 0 1 1 1 2 1 0 1 1 0 2 1 1 2 1 3 2 0 1 1 1 0 1 1 1 3 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla08g01236 Cla_Chr08 FPKM 0.13217 0.149698 0.302109 0.0 0.96734 0.964668 1.28593 0.410734 0.187599 0.103875