Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01246 ATGAAGCGTAGCGCCTCCGAGTTGGCTCTTGAAGAGTTCCTCAAAAAAGCCGCCATCATCTCTCCCGACGACGACGTTATCGACCCCGACGACGAGGACGTTTTCAAAATCGAACAACAACAAATCATCAGAAGCCCAAAAAGAGGCAGAAACTTTCAGGATTCCGCCGATGCCACCTGCTTCTTCGGCGATATTGATTTCAGCTGTTTCCTCGTCAAAAATAATCGGGAGATAATGGACGCAATTGTTAACTGTGGAGGTGGGCTGGCGGAGGCTCCTTTATGGTCACAGAATCTCACTCCTAAGCATTCAAGCTTTTCAGCCACTATAGATTCCCAGTCTTCTATTGTGAGCAGCCCAACATCAGCCAGTAATTTGATGGGCAGAGAGCACCAAAGAGGTAACAATAGTGGGTCCTCTGAAGATCAATCTGATGATGAAATTGAAGCTGGCTCTTGTGAACAAAGCACTGACCCTCTTGCTTTGAAGAGAATCAGAAGAATGATCTCTAACAGGGACTCTGCTAGAAGGTCAAGAAGAAGAAAACAAGCTCATTTGGCTGAACTCGAGAACCAGGTGAAACAATTGAAAGGAGAAAATGAAACCTTGTTCAACCAACTTTTAGATGCTAGTCAACAATATCGTGATGCCAATACGAACAACCGTGTGCTTAAATCAGACGTAGACGCATTGAGAGCTAAGGTGAAGTTGGCGGAAGATACACTTGCTAGAGGCTCAATGACCTGTAGCTTGAATCAGCTGCTGCAGAGTCATTTGAGCACACCACAGCCACTCACGGCACTCAGACGAATGTCAAATGTCGCACCGCCGCTCGGTTTACCTGGAGACGAAGTTTCTTATTCCTGCGTGACAATGTCGGGGCAGAACCCGACCGTGGGGCTCCCGAACTCAGATATGCATATGAAAACAGGAATGGGTAGTGAGGCTGTTAGCTGTGTTTCAGGGATTTGGCCTAGAAATTAG 984 46.85 MKRSASELALEEFLKKAAIISPDDDVIDPDDEDVFKIEQQQIIRSPKRGRNFQDSADATCFFGDIDFSCFLVKNNREIMDAIVNCGGGLAEAPLWSQNLTPKHSSFSATIDSQSSIVSSPTSASNLMGREHQRGNNSGSSEDQSDDEIEAGSCEQSTDPLALKRIRRMISNRDSARRSRRRKQAHLAELENQVKQLKGENETLFNQLLDASQQYRDANTNNRVLKSDVDALRAKVKLAEDTLARGSMTCSLNQLLQSHLSTPQPLTALRRMSNVAPPLGLPGDEVSYSCVTMSGQNPTVGLPNSDMHMKTGMGSEAVSCVSGIWPRN 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25387612 25391512 - ClCG08G012480.1 Cla08g01246 278901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01246 327 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 161 224 IPR004827 GO:0003700|GO:0006355
Cla08g01246 327 MobiDBLite consensus disorder prediction 106 155 - -
Cla08g01246 327 SUPERFAMILY Leucine zipper domain 163 212 IPR046347 GO:0003700|GO:0006355
Cla08g01246 327 CDD bZIP_plant_GBF1 181 215 IPR045314 GO:0003700|GO:0006355
Cla08g01246 327 MobiDBLite consensus disorder prediction 106 141 - -
Cla08g01246 327 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 166 181 IPR004827 GO:0003700|GO:0006355
Cla08g01246 327 Gene3D - 162 218 - -
Cla08g01246 327 Pfam bZIP transcription factor 161 207 IPR004827 GO:0003700|GO:0006355
Cla08g01246 327 PANTHER BASIC LEUCINE ZIPPER 9 1 325 - -
Cla08g01246 327 Coils Coil 172 241 - -
Cla08g01246 327 PANTHER BASIC LEUCINE ZIPPER 63 1 325 - -
Cla08g01246 327 SMART brlzneu 159 223 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g01246 Cla-Chr8:25387612 Cla09g00691 Cla-Chr9:6707105 1.13E-14 dispersed
Cla08g01246 Cla-Chr8:25387612 Cla02g01633 Cla-Chr2:31106234 1.59E-26 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61585 PF00170 bZIP_1 1.90E-14 CL0018 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01246 K25784 - csv:101210908 530.791