Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01254 ATGGCCAAACCTCGGCTCTTCTTCTTCTTCTTCCTCCTCCTCCTCCTCCTCCTCTTCAACCTCCCGCCGCCCACTTCCGCCGCCTCCGCCGCCGCCGAAACTCTCCTCCGATTCAAATCCTCTCTCACCAACGCCATCGCATTATCCAACTGGAACTCCTCCGTCCCTCTCTGTTCTGGCGACCGCCGGTTCTGGACCGGCTTGATTTGCAGAAAGGGCCAACTGTACGGCCTCCGCCTCGAGAACATGAGCCTCGGAGGCGCCGTCGACGTCGACGCCTTAGCCGCCCTCCCGACGCTAAGAACTCTGAGTCTGATGAACAATGGACTTCAAGGCCCAATGCCCGATGTGAAGCAAATTGGAGCGCTTAGGGCTTTGTATCTGTCGAATAATAACTTCTCTGGTTCGATTTCGGGAGATGCGTTTGAAGGAATGGGGAATTTAAAGAAATTGTATTTGAGTCGGAATGAATTTTCCGGCGAGATTCCGGCGTCGTTGGTGGAATTGAAAGGGGTGGTGGAATTGGGATTGGAGGAGAATTTGTTTGAAGGAAGAATACCGGATTTCGGGGAAAGGGATTGGAAGTATTTGAATTTTTCGGGGAATCGTTTGGAAGGGCCGATTCCTTCTGGATTGAAGAAGAATACTAATTTCACTTCTTTTCTTGGTGACGACGGGCTATGTGGAGAGCCACTAGCACCATGCAAATCATCCACAAAGAAATGGTCCATTCTCATCGGAGTACTCTCCGGCGCCGCCGCCTTAATCCTCTGTCTCGTTCTCCTCCGCTGCTTTCTGCGGCCATCTAAATCCTCCGCCGCCGTACACGACGACACGAAAACAGAAACAAAAACCAAATTGTTCCTCTCTCCGAAAATCCTTTTCAAAAGGCCGGAAAAGACCCACCAATATTCCTCGACCGACTCAGATGAGAACTCGAATTTGAGCGGTCCGAGCGGTTCGGCTCTGTGCTTCGTGAGAACCGACAGGCCCCGGTTCGACTTTCAAGAACTCCTTGCCGCGTCGGCTGAAGTTCTTGGCAGTGGGAGTTTTGGAAAGTCTTATAAAGCGATGCTTTCAAATGGGTCGTCGGCGGTGGTGGTGAAGAGATTTGGGCAAATGAACGCCGCCGGAAAAGAGGAATTTTACAGCCACATGCGGCGGCTTGGACGGTTGTCGCATCCCAATTTACTGCCGCTTATTGCGTTTTATTATGGGAAAGATGATAAGCTTTTGGTGTCTGACTTTGTTCCCAATGGCAGCTTGGCTAGTCACCTTCATGGGAAAAGAGGAGAAGGAAATGCAAGGCTAAATTGGGGAAAAAGGCTAAAAATCATAAAAGGAGTAGCAAGAGGCCTTTCTTATCTCCACAAAGAACTCCCAAATTTAAGCCTTCCACATGGCCATTTAAAATCCTCCAATGTCCTTCTCGACCAAAATTTCACTCCAATTTTATCCGATTATGCCCTTTTCCCTCTCCTCCAAAAATCCCACGCCCACCACCACATGGCCGCTTTCAAGTCGCCCGAATTCTCCCCCGCCCACCACGACCGTACCTCCAAATCCTCCGACGTCTGGAGCCTCGGAATCTTAATCCTCGAAACCCTCACCGGAAAATTCCCCACTAACTATCTCCGCCAGGGCAAGGGCGCCGCCGACGACCTCGCTGCCTGGGTTAATGCCGTCGTCAGGGAAGAGTGGACGGCGGAGGTTTTCGACGGCGATCTGCTCGGCGGCAGCGGAACGGCGGCGGAGGAGGATTACTGTGATTGGGATTATAATGAAGATATGTTGAAGCTTTTGAAGATTGGGATGTGTTGCTGTGAATGGGAGATTGGGAAAAGGTGGGGATTGAAACAAGCTGTTGAAAAAATTGAGGAATTGAATTATGATGATGATGAAGAAGAAGAGAATTATTCTTATTATGGGAGTGATTATAATGAGAGTTTCTATTCTAATTCTTCTAATTTCAAGGGGAGGAGAAGAACAAGAACTACTAATGAGGATGAATCTTCATTTTTAAGTTAG 2028 49.41 MAKPRLFFFFFLLLLLLLFNLPPPTSAASAAAETLLRFKSSLTNAIALSNWNSSVPLCSGDRRFWTGLICRKGQLYGLRLENMSLGGAVDVDALAALPTLRTLSLMNNGLQGPMPDVKQIGALRALYLSNNNFSGSISGDAFEGMGNLKKLYLSRNEFSGEIPASLVELKGVVELGLEENLFEGRIPDFGERDWKYLNFSGNRLEGPIPSGLKKNTNFTSFLGDDGLCGEPLAPCKSSTKKWSILIGVLSGAAALILCLVLLRCFLRPSKSSAAVHDDTKTETKTKLFLSPKILFKRPEKTHQYSSTDSDENSNLSGPSGSALCFVRTDRPRFDFQELLAASAEVLGSGSFGKSYKAMLSNGSSAVVVKRFGQMNAAGKEEFYSHMRRLGRLSHPNLLPLIAFYYGKDDKLLVSDFVPNGSLASHLHGKRGEGNARLNWGKRLKIIKGVARGLSYLHKELPNLSLPHGHLKSSNVLLDQNFTPILSDYALFPLLQKSHAHHHMAAFKSPEFSPAHHDRTSKSSDVWSLGILILETLTGKFPTNYLRQGKGAADDLAAWVNAVVREEWTAEVFDGDLLGGSGTAAEEDYCDWDYNEDMLKLLKIGMCCCEWEIGKRWGLKQAVEKIEELNYDDDEEEENYSYYGSDYNESFYSNSSNFKGRRRTRTTNEDESSFLS 675
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25459986 25465572 + ClCG08G012560.1 Cla08g01254 278909

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01254 675 MobiDBLite consensus disorder prediction 642 660 - -
Cla08g01254 675 Pfam Leucine rich repeat N-terminal domain 30 70 IPR013210 -
Cla08g01254 675 Pfam Protein kinase domain 343 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla08g01254 675 Pfam Leucine rich repeat 123 181 IPR001611 GO:0005515
Cla08g01254 675 Gene3D Ribonuclease Inhibitor 30 139 IPR032675 -
Cla08g01254 675 Gene3D Ribonuclease Inhibitor 140 228 IPR032675 -
Cla08g01254 675 MobiDBLite consensus disorder prediction 641 675 - -
Cla08g01254 675 Coils Coil 618 638 - -
Cla08g01254 675 Gene3D Transferase(Phosphotransferase) domain 1 417 649 - -
Cla08g01254 675 MobiDBLite consensus disorder prediction 299 318 - -
Cla08g01254 675 SUPERFAMILY Protein kinase-like (PK-like) 344 633 IPR011009 -
Cla08g01254 675 SUPERFAMILY L domain-like 34 220 - -
Cla08g01254 675 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 13 638 - -
Cla08g01254 675 Gene3D Phosphorylase Kinase; domain 1 308 416 - -
Cla08g01254 675 ProSiteProfiles Protein kinase domain profile. 340 675 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla08g01254 675 PANTHER LRR RECEPTOR-LIKE KINASE 13 638 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01254 - - - bhj:120076564 1131.7
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02641 Cla-Chr5:37614865 Cla08g01254 Cla-Chr8:25459986 0 dispersed
Cla06g01398 Cla-Chr6:27520077 Cla08g01254 Cla-Chr8:25459986 0 dispersed
Cla08g01254 Cla-Chr8:25459986 Cla11g00126 Cla-Chr11:1621492 2.23E-142 dispersed
Cla08g01254 Cla-Chr8:25459986 Cla07g01399 Cla-Chr7:31128770 1.22E-175 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g244 . . . . . . . . . . . . . . . . . Bhi04g01111 . . . . . Lcy13g1363 . . . . . . . . . . Cone20ag0623 . . . Cme03g01708 . . . . Bpe14g00541 . . . . . . . . . . . . . . . . . . . Cla08g01254 . . . . . . Lsi08g01116 Csa02g02307 . Cme04g00319
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012527 0 1 0 0 1 1 2 1 1 1 1 1 2 1 0 2 1 0 2 1 1 1 1 1 0 1 0 0 1 0 25
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80755 PF00069 Pkinase 2.40E-27 CL0016 Cla PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla08g01254 Cla_Chr08 FPKM 44.489784 43.773258 16.354404 15.712159 8.345705 7.41477 6.682273 25.891592 23.736839 22.524826